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Biology and Biochemistry
Switzerland
2023

D-Index & Metrics

Biology and Biochemistry

D-Index
86
Citations
58796
World Ranking
2902
National Ranking
61

Research.com Recognitions

  • 2023 - Research.com Biology and Biochemistry in Switzerland Leader Award

Overview

Ioannis Xenarios is affiliated with the University of Lausanne in Switzerland and has contributed extensively to the fields of biochemistry, genetics, molecular biology, and medicine. Their research output includes numerous publications focusing on molecular biology, genetics, infectious diseases, immunology, and epidemiology.

The scientist's work covers key topics such as gene expression and cancer classification, SARS-CoV-2 and COVID-19 research, mitochondrial function and pathology, genetic mapping and diversity in plants and animals, vaccines and immunoinformatics approaches, metabolism and genetic disorders, as well as single-cell and spatial transcriptomics.

Among their recent papers are the following:

  • Key Parameters of Tumor Epitope Immunogenicity Revealed Through a Consortium Approach Improve Neoantigen Prediction (2020, Cell)
  • Integrated proteogenomic deep sequencing and analytics accurately identify non-canonical peptides in tumor immunopeptidomes (2020, Nature Communications)
  • Fisetin protects against cardiac cell death through reduction of ROS production and caspases activity (2020, Scientific Reports)
  • Integrated multi-omics reveals anaplerotic rewiring in methylmalonyl-CoA mutase deficiency (2023, Nature Metabolism)
  • Quantification of the spread of SARS-CoV-2 variant B.1.1.7 in Switzerland (2021, Epidemics)

Frequent co-authors with whom Ioannis Xenarios has published multiple works include Emanuel Schmid-Siegert, Keith Harshman, Alaaddin Bulak Arpat, Nastassia Gobet, and Amel Bekkar.

Their publications have appeared predominantly in venues such as bioRxiv (Cold Spring Harbor Laboratory), Zenodo (CERN European Organization for Nuclear Research), Bioinformatics, Frontiers in Immunology, and Cell.

Best Publications

  • UniProt: A hub for protein information

    Alex Bateman;Maria Jesus Martin;Claire O'Donovan;Michele Magrane

  • ProteomeXchange provides globally coordinated proteomics data submission and dissemination

    Juan A. Vizcaíno;Eric W Deutsch;Rui Wang;Attila Csordas

  • Activities at the Universal Protein Resource (UniProt)

    R Apweiler;A Bateman;MJ Martin;C O'Donovan

  • The Database of Interacting Proteins: 2004 update

    Lukasz Salwínski;Christopher S. Miller;Adam J. Smith;Frank K. Pettit

  • ExPASy: SIB bioinformatics resource portal.

    Panu Artimo;Manohar Jonnalagedda;Konstantin Arnold;Delphine Baratin

  • DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions

    Ioannis Xenarios;Lukasz Salwínski;Xiaoqun Joyce Duan;Patrick Higney

  • InterPro in 2017-beyond protein family and domain annotations

    Robert D. Finn;Teresa K. Attwood;Patricia C. Babbitt;Alex Bateman

  • DIP: The Databases of Interacting Protein: 2001 update

    Ioannis Xenarios;Esteban Fernandez;Lukasz Salwinski;Xiaoqun Joyce Duan

  • New and continuing developments at PROSITE

    Christian J. A. Sigrist;Edouard de Castro;Lorenzo Cerutti;Béatrice A. Cuche

  • The InterPro protein families database: the classification resource after 15 years

    Alex L. Mitchell;Hsin-Yu Chang;Louise C. Daugherty;Matthew Fraser

  • DIP: the Database of Interacting Proteins

    Ioannis Xenarios;Danny W. Rice;Lukasz Salwínski;Marisa K. Baron

  • T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension

    Paolo Di Tommaso;Sebastien Moretti;Ioannis Xenarios;Miquel Orobitg

  • Protein function in the post-genomic era

    David Eisenberg;Edward M. Marcotte;Ioannis Xenarios;Todd O. Yeates

  • Ongoing and future developments at the Universal Protein Resource

    Anne Morgat;Rolf Apweiler;Maria-Jesus Martin;C. O'Donovan

  • The Universal Protein Resource (UniProt) in 2010

    R Apweiler;MJ Martin;C O'Donovan;M Magrane

  • Protein Interactions Two Methods for Assessment of the Reliability of High Throughput Observations

    Charlotte M. Deane;Łukasz Salwiński;Ioannis Xenarios;David Eisenberg

  • Gene expression across mammalian organ development

    Margarida Cardoso-Moreira;Margarida Cardoso-Moreira;Jean Halbert;Delphine Valloton;Britta Velten

  • UniProtKB/Swiss-Prot, the Manually Annotated Section of the UniProt KnowledgeBase: How to Use the Entry View.

    Emmanuel Boutet;Damien Lieberherr;Michael Tognolli;Michel Schneider

  • The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data.

    Henning Hermjakob;Luisa Montecchi-Palazzi;Gary Bader;Jérôme Wojcik

  • Gene ontology annotations and resources

    Blake Ja;Dolan M;Drabkin H

Frequent Co-Authors

Alan Bridge
Alan Bridge Swiss Institute of Bioinformatics
Lydie Bougueleret
Lydie Bougueleret Swiss Institute of Bioinformatics
Nicole Redaschi
Nicole Redaschi Swiss Institute of Bioinformatics
George Coukos
George Coukos Cornell University
Brian Stevenson
Brian Stevenson University of Kentucky
David Eisenberg
David Eisenberg Harvard University
Rolf Apweiler
Rolf Apweiler European Bioinformatics Institute
Henning Hermjakob
Henning Hermjakob European Bioinformatics Institute
Sandra Orchard
Sandra Orchard European Bioinformatics Institute
Olivier Michielin
Olivier Michielin University of Lausanne

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