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Hiroki R. Ueda

Hiroki R. Ueda

University of Tokyo
Japan

D-Index & Metrics

Discipline name D-Index World Ranking Current World Ranking National Ranking Current National Ranking Publications Citations
Molecular Biology 71 1348 1201 114 107 230 26599

Hiroki R. Ueda publications per year

The chart shows the history of publications by Hiroki R. Ueda between 1994 and 2026, highlighting the no. of papers published in each year and offering an overview of the publication velocity of this scholar. Hiroki R. Ueda published across 33 years, from 1994 to 2026, averaging 11.1 papers a year. Output peaked at 33 publications in 2017. 12 of the 366 publications appeared in the last two years.

No. of publications
10 20 30
Bar chart. Horizontal axis: year, 1994 to 2026. Vertical axis: number of publications, 0 to 33. Peak 33 publications in 2017. 1994: 1 publication 1995: 0 publications 1996: 0 publications 1997: 0 publications 1998: 4 publications 1999: 0 publications 2000: 1 publication 2001: 3 publications 2002: 7 publications 2003: 2 publications 2004: 8 publications 2005: 8 publications 2006: 12 publications 2007: 9 publications 2008: 15 publications 2009: 15 publications 2010: 9 publications 2011: 7 publications 2012: 10 publications 2013: 17 publications 2014: 11 publications 2015: 13 publications 2016: 17 publications 2017: 33 publications 2018: 20 publications 2019: 21 publications 2020: 31 publications 2021: 31 publications 2022: 20 publications 2023: 12 publications 2024: 17 publications 2025: 11 publications 2026: 1 publication
1994 2026

366 publications in total across all disciplines

View publications per year as a table
Hiroki R. Ueda: publications per year, 1994 to 2026
Year Publications
1994 1
1995 0
1996 0
1997 0
1998 4
1999 0
2000 1
2001 3
2002 7
2003 2
2004 8
2005 8
2006 12
2007 9
2008 15
2009 15
2010 9
2011 7
2012 10
2013 17
2014 11
2015 13
2016 17
2017 33
2018 20
2019 21
2020 31
2021 31
2022 20
2023 12
2024 17
2025 11
2026 1
Total 366
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Hiroki R. Ueda publication distribution in Molecular Biology in 2026

The chart shows the distribution of publications by all Research.com ranked scientists in the field of Molecular Biology in 2026. The highlighted bar marks where Hiroki R. Ueda sits on this spectrum.

No. of scientists
50 100 150
Bar chart with 53 bars. Horizontal axis: publications, 47–56 to 564+. Vertical axis: number of scientists, 0 to 177. Most scientists, 177, have 117–126 publications. The last bar groups every scientist with 564 publications or more. The highlighted bar, 227–236 publications, is where this scientist sits. 47–56 publications: 7 scientists 57–66 publications: 17 scientists 67–76 publications: 65 scientists 77–86 publications: 90 scientists 87–96 publications: 125 scientists 97–106 publications: 131 scientists 107–116 publications: 162 scientists 117–126 publications: 177 scientists 127–136 publications: 158 scientists 137–146 publications: 158 scientists 147–156 publications: 146 scientists 157–166 publications: 159 scientists 167–176 publications: 131 scientists 177–186 publications: 110 scientists 187–196 publications: 112 scientists 197–206 publications: 100 scientists 207–216 publications: 89 scientists 217–226 publications: 98 scientists 227–236 publications: 74 scientists 237–246 publications: 72 scientists 247–256 publications: 63 scientists 257–266 publications: 53 scientists 267–276 publications: 54 scientists 277–286 publications: 49 scientists 287–296 publications: 52 scientists 297–306 publications: 43 scientists 307–316 publications: 46 scientists 317–326 publications: 41 scientists 327–336 publications: 42 scientists 337–346 publications: 31 scientists 347–356 publications: 28 scientists 357–366 publications: 29 scientists 367–376 publications: 26 scientists 377–386 publications: 24 scientists 387–396 publications: 24 scientists 397–406 publications: 14 scientists 407–416 publications: 13 scientists 417–426 publications: 20 scientists 427–436 publications: 12 scientists 437–446 publications: 20 scientists 447–456 publications: 11 scientists 457–466 publications: 10 scientists 467–476 publications: 14 scientists 477–486 publications: 14 scientists 487–496 publications: 10 scientists 497–506 publications: 13 scientists 507–516 publications: 13 scientists 517–526 publications: 2 scientists 527–536 publications: 4 scientists 537–546 publications: 6 scientists 547–556 publications: 8 scientists 557–563 publications: 6 scientists 564+ publications: 100 scientists
47–56 publications 564+

This scientist: 230 publications — 67th percentile

67% of scientists in this discipline score the same or lower.

The last bar groups every scientist with 564 publications or more.

View publications distribution as a table
Number of Molecular Biology scientists by publication count, Research.com 2026 ranking edition. Based on 3,076 ranked scientists.
Publications Scientists This scientist
47–56 7
57–66 17
67–76 65
77–86 90
87–96 125
97–106 131
107–116 162
117–126 177
127–136 158
137–146 158
147–156 146
157–166 159
167–176 131
177–186 110
187–196 112
197–206 100
207–216 89
217–226 98
227–236 74 230
237–246 72
247–256 63
257–266 53
267–276 54
277–286 49
287–296 52
297–306 43
307–316 46
317–326 41
327–336 42
337–346 31
347–356 28
357–366 29
367–376 26
377–386 24
387–396 24
397–406 14
407–416 13
417–426 20
427–436 12
437–446 20
447–456 11
457–466 10
467–476 14
477–486 14
487–496 10
497–506 13
507–516 13
517–526 2
527–536 4
537–546 6
547–556 8
557–563 6
564+ 100
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Hiroki R. Ueda D-index placement in Molecular Biology in 2026

The chart shows the D-index (discipline H-index) distribution of Molecular Biology scientists ranked by Research.com in 2026. The highlighted bar marks where Hiroki R. Ueda sits on this spectrum.

No. of scientists
25 50 75 100 125
Bar chart with 54 bars. Horizontal axis: D-Index, 40–41 to 145+. Vertical axis: number of scientists, 0 to 131. Most scientists, 131, have 64–65 D-Index. The last bar groups every scientist with 145 D-Index or more. The highlighted bar, 70–71 D-Index, is where this scientist sits. 40–41 D-Index: 36 scientists 42–43 D-Index: 101 scientists 44–45 D-Index: 115 scientists 46–47 D-Index: 121 scientists 48–49 D-Index: 118 scientists 50–51 D-Index: 130 scientists 52–53 D-Index: 106 scientists 54–55 D-Index: 116 scientists 56–57 D-Index: 113 scientists 58–59 D-Index: 129 scientists 60–61 D-Index: 120 scientists 62–63 D-Index: 105 scientists 64–65 D-Index: 131 scientists 66–67 D-Index: 95 scientists 68–69 D-Index: 97 scientists 70–71 D-Index: 106 scientists 72–73 D-Index: 83 scientists 74–75 D-Index: 89 scientists 76–77 D-Index: 77 scientists 78–79 D-Index: 70 scientists 80–81 D-Index: 73 scientists 82–83 D-Index: 60 scientists 84–85 D-Index: 48 scientists 86–87 D-Index: 45 scientists 88–89 D-Index: 50 scientists 90–91 D-Index: 31 scientists 92–93 D-Index: 51 scientists 94–95 D-Index: 43 scientists 96–97 D-Index: 38 scientists 98–99 D-Index: 39 scientists 100–101 D-Index: 41 scientists 102–103 D-Index: 29 scientists 104–105 D-Index: 33 scientists 106–107 D-Index: 35 scientists 108–109 D-Index: 20 scientists 110–111 D-Index: 38 scientists 112–113 D-Index: 19 scientists 114–115 D-Index: 28 scientists 116–117 D-Index: 13 scientists 118–119 D-Index: 23 scientists 120–121 D-Index: 16 scientists 122–123 D-Index: 15 scientists 124–125 D-Index: 11 scientists 126–127 D-Index: 21 scientists 128–129 D-Index: 7 scientists 130–131 D-Index: 13 scientists 132–133 D-Index: 14 scientists 134–135 D-Index: 17 scientists 136–137 D-Index: 9 scientists 138–139 D-Index: 8 scientists 140–141 D-Index: 16 scientists 142–143 D-Index: 7 scientists 144 D-Index: 7 scientists 145+ D-Index: 100 scientists
40–41 D-Index 145+

This scientist: 71 D-Index — 57th percentile

57% of scientists in this discipline score the same or lower.

The last bar groups every scientist with 145 D-Index or more.

View D-Index distribution as a table
Number of Molecular Biology scientists by D-index, Research.com 2026 ranking edition. Based on 3,076 ranked scientists.
D-Index Scientists This scientist
40–41 36
42–43 101
44–45 115
46–47 121
48–49 118
50–51 130
52–53 106
54–55 116
56–57 113
58–59 129
60–61 120
62–63 105
64–65 131
66–67 95
68–69 97
70–71 106 71
72–73 83
74–75 89
76–77 77
78–79 70
80–81 73
82–83 60
84–85 48
86–87 45
88–89 50
90–91 31
92–93 51
94–95 43
96–97 38
98–99 39
100–101 41
102–103 29
104–105 33
106–107 35
108–109 20
110–111 38
112–113 19
114–115 28
116–117 13
118–119 23
120–121 16
122–123 15
124–125 11
126–127 21
128–129 7
130–131 13
132–133 14
134–135 17
136–137 9
138–139 8
140–141 16
142–143 7
144 7
145+ 100
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Overview

Hiroki R. Ueda is affiliated with the University of Tokyo in Japan with a research focus spanning multiple domains within biochemistry, genetics, molecular biology, and neuroscience. Their work integrates molecular and cellular techniques to investigate neural and biological functions, often emphasizing imaging and molecular profiling.

The scientist's main fields of study include:

  • Biochemistry, Genetics and Molecular Biology
  • Neuroscience

Subfields of their research focus include:

  • Molecular Biology
  • Cognitive Neuroscience
  • Biophysics
  • Cellular and Molecular Neuroscience
  • Endocrine and Autonomic Systems

The key research topics explored by Hiroki R. Ueda cover areas such as:

  • Sleep and Wakefulness Research
  • Circadian rhythm and melatonin
  • Cell Image Analysis Techniques
  • Neuroscience and Neuropharmacology Research
  • Advanced Fluorescence Microscopy Techniques
  • Single-cell and spatial transcriptomics
  • Neural dynamics and brain function

The scientist has published a number of recently influential papers including:

  • "Tissue clearing and its applications in neuroscience" (2020), published in Nature reviews. Neuroscience
  • "Versatile whole-organ/body staining and imaging based on electrolyte-gel properties of biological tissues" (2020), published in Nature Communications
  • "Whole-Brain Profiling of Cells and Circuits in Mammals by Tissue Clearing and Light-Sheet Microscopy" (2020), published in Neuron
  • "Generation of a p16 Reporter Mouse and Its Use to Characterize and Target p16high Cells In Vivo" (2020), published in Cell Metabolism
  • "Tissue clearing" (2021), published in Nature Reviews Methods Primers

Frequent co-authors collaborating with Hiroki R. Ueda include:

  • Koji L. Ode
  • Rikuhiro G. Yamada
  • Etsuo A. Susaki
  • Shoi Shi
  • Katsuhiko Matsumoto

Regular publication venues for this scientist's research work include:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Proceedings for Annual Meeting of The Japanese Pharmacological Society
  • Nature Communications
  • PLoS Biology
  • Proceedings of the National Academy of Sciences

Best Publications

  • The Transcriptional Landscape of the Mammalian Genome

    P. Carninci;T. Kasukawa;S. Katayama;J. Gough

  • Whole-Brain Imaging with Single-Cell Resolution Using Chemical Cocktails and Computational Analysis

    Etsuo A. Susaki;Kazuki Tainaka;Kazuki Tainaka;Dimitri Perrin;Fumiaki Kishino

  • Mutational Analysis Reveals the Origin and Therapy-Driven Evolution of Recurrent Glioma

    Brett E. Johnson;Tali Mazor;Chibo Hong;Michael Barnes

  • A transcription factor response element for gene expression during circadian night

    Hiroki R. Ueda;Wenbin Chen;Akihito Adachi;Hisanori Wakamatsu

  • System-level identification of transcriptional circuits underlying mammalian circadian clocks.

    Hiroki R Ueda;Satoko Hayashi;Wenbin Chen;Motoaki Sano

  • Trans-ancestry mutational landscape of hepatocellular carcinoma genomes

    Yasushi Totoki;Kenji Tatsuno;Kyle R. Covington;Hiroki Ueda

  • Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer

    Akihiro Fujimoto;Mayuko Furuta;Yasushi Totoki;Tatsuhiko Tsunoda

  • Maintenance of self-renewal ability of mouse embryonic stem cells in the absence of DNA methyltransferases Dnmt1, Dnmt3a and Dnmt3b.

    Akiko Tsumura;Tomohiro Hayakawa;Yuichi Kumaki;Shin-ichiro Takebayashi

  • Thyrotrophin in the pars tuberalis triggers photoperiodic response

    Nobuhiro Nakao;Hiroko Ono;Takashi Yamamura;Tsubasa Anraku

  • Recurrent gain-of-function mutations of RHOA in diffuse-type gastric carcinoma

    Miwako Kakiuchi;Takashi Nishizawa;Hiroki Ueda;Kengo Gotoh

  • Whole-Body Imaging with Single-Cell Resolution by Tissue Decolorization

    Kazuki Tainaka;Shimpei I Kubota;Takeru Q Suyama;Etsuo A Susaki

  • Quartz-Seq: a highly reproducible and sensitive single-cell RNA sequencing method, reveals non-genetic gene-expression heterogeneity

    Yohei Sasagawa;Itoshi Nikaido;Tetsutaro Hayashi;Hiroki Danno

  • An improved single-cell cDNA amplification method for efficient high-density oligonucleotide microarray analysis

    Kazuki Kurimoto;Yukihiro Yabuta;Yasuhide Ohinata;Yukiko Ono

  • Feedback repression is required for mammalian circadian clock function

    Trey K Sato;Rikuhiro G Yamada;Hideki Ukai;Julie E Baggs

  • Chemical Landscape for Tissue Clearing Based on Hydrophilic Reagents.

    Kazuki Tainaka;Tatsuya C. Murakami;Etsuo A. Susaki;Chika Shimizu

  • Genome-wide transcriptional orchestration of circadian rhythms in Drosophila

    Hiroki R. Ueda;Akira Matsumoto;Miho Kawamura;Masamitsu Iino

  • CKIε/δ-dependent phosphorylation is a temperature-insensitive, period-determining process in the mammalian circadian clock

    Yasushi Isojima;Masato Nakajima;Hideki Ukai;Hiroshi Fujishima

  • Delay in Feedback Repression by Cryptochrome 1 Is Required for Circadian Clock Function

    Maki Ukai-Tadenuma;Rikuhiro G. Yamada;Haiyan Xu;Jürgen A. Ripperger

  • Measurement of internal body time by blood metabolomics

    Yoichi Minami;Takeya Kasukawa;Yuji Kakazu;Masayuki Iigo

  • Whole-body and Whole-Organ Clearing and Imaging Techniques with Single-Cell Resolution: Toward Organism-Level Systems Biology in Mammals

    Etsuo A. Susaki;Hiroki R. Ueda;Hiroki R. Ueda;Hiroki R. Ueda

Frequent Co-Authors

Hiroyuki Aburatani
Hiroyuki Aburatani University of Tokyo
Masamitsu Iino
Masamitsu Iino Nihon University
Yasufumi Shigeyoshi
Yasufumi Shigeyoshi Kindai University
Tadatoshi Takayama
Tadatoshi Takayama Nihon University
Tsutomu Suzuki
Tsutomu Suzuki University of Tokyo
John B. Hogenesch
John B. Hogenesch Cincinnati Children's Hospital Medical Center
Masaomi Nangaku
Masaomi Nangaku University of Tokyo
Tatsuhiro Shibata
Tatsuhiro Shibata University of Tokyo
Masashi Fukayama
Masashi Fukayama University of Tokyo
Hiroshi Kiyonari
Hiroshi Kiyonari RIKEN

External Links

Wikipedia of Hiroki R. Ueda Personal website of Hiroki R. Ueda

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Best Scientists Citing Hiroki R. Ueda

Piero Carninci

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Yoshihide Hayashizaki

Yoshihide Hayashizaki

RIKEN

Publications: 101

John S. Mattick

John S. Mattick

University of New South Wales

Publications: 84

David A. Hume

David A. Hume

University of Queensland

Publications: 55

Joseph S. Takahashi

Joseph S. Takahashi

The University of Texas Southwestern Medical Center

Publications: 55

Josep M. Llovet

Josep M. Llovet

University of Barcelona

Publications: 50

Steve A. Kay

Steve A. Kay

University of Southern California

Publications: 49

Marcel E. Dinger

Marcel E. Dinger

University of Sydney

Publications: 48

Eric S. Lander

Eric S. Lander

Broad Institute

Publications: 46

Alistair R. R. Forrest

Alistair R. R. Forrest

Harry Perkins Institute of Medical Research

Publications: 44

Paolo Sassone-Corsi

Paolo Sassone-Corsi

University of California, Irvine

Publications: 43

John L. Rinn

John L. Rinn

University of Colorado Boulder

Publications: 43

John B. Hogenesch

John B. Hogenesch

Cincinnati Children's Hospital Medical Center

Publications: 42

Hideya Kawaji

Hideya Kawaji

RIKEN

Publications: 41

Albin Sandelin

Albin Sandelin

University of Copenhagen

Publications: 40

Sean M. Grimmond

Sean M. Grimmond

University of Melbourne

Publications: 39

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