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Computer Science

D-Index
41
Citations
13385
World Ranking
8603
National Ranking
422

Overview

Tobias Marschall is affiliated with Heinrich Heine University Düsseldorf in Germany, focusing on research within the field of Biochemistry, Genetics and Molecular Biology. Their work spans various subfields, including Molecular Biology, Genetics, Plant Science, Cancer Research, and Surgery.

The primary research topics covered in their publications include:

  • Genomics and Phylogenetic Studies
  • Chromosomal and Genetic Variations
  • Genomic variations and chromosomal abnormalities
  • Genomics and Rare Diseases
  • Cancer Genomics and Diagnostics
  • RNA and protein synthesis mechanisms
  • Genome Rearrangement Algorithms

Tobias Marschall's recent papers include the following:

  • The complete sequence of a human genome, 2022, Science
  • Eleven grand challenges in single-cell data science, 2020, Genome biology
  • High-coverage whole-genome sequencing of the expanded 1000 Genomes Project cohort including 602 trios, 2022, Cell
  • Haplotype-resolved diverse human genomes and integrated analysis of structural variation, 2021, Science
  • Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes, 2020, Nature Biotechnology

Frequent coauthors who have collaborated extensively with Tobias Marschall include:

  • Evan E. Eichler
  • Jan O. Korbel
  • Jana Ebler
  • Peter Ebert
  • David Porubskỳ

The venues where Tobias Marschall has published multiple works are:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Zenodo (CERN European Organization for Nuclear Research)
  • Nature
  • Genome biology
  • Nature Biotechnology

Best Publications

  • Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome.

    Aaron M. Wenger;Paul Peluso;William J. Rowell;Pi-Chuan Chang

  • Eleven grand challenges in single-cell data science

    David Lähnemann;David Lähnemann;Johannes Köster;Johannes Köster;Ewa Szczurek;Davis J. McCarthy;Davis J. McCarthy

  • Multi-platform discovery of haplotype-resolved structural variation in human genomes

    Mark J.P. Chaisson;Mark J.P. Chaisson;Ashley D. Sanders;Xuefang Zhao;Xuefang Zhao;Ankit Malhotra

  • Haplotype-resolved diverse human genomes and integrated analysis of structural variation.

    Peter Ebert;Peter A. Audano;Qihui Zhu;Bernardo Rodriguez-Martin

  • Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes.

    Kishwar Shafin;Trevor Pesout;Ryan Lorig-Roach;Marina Haukness

  • WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads

    Murray Patterson;Tobias Marschall;Nadia Pisanti;Leo van Iersel

  • WhatsHap: fast and accurate read-based phasing

    M. Martin;Patterson;S. Garg (Shilpa);S. Fischer

  • Mapping and phasing of structural variation in patient genomes using nanopore sequencing

    Mircea Cretu Stancu;Markus J. van Roosmalen;Ivo Renkens;Marleen M. Nieboer

  • A robust benchmark for detection of germline large deletions and insertions.

    Justin M. Zook;Nancy F. Hansen;Nathan D. Olson;Lesley Chapman

  • Computational pan-genomics: status, promises and challenges.

    Tobias Marschall;Manja Marz;Manja Marz;Thomas Abeel;Louis Dijkstra

  • GraphAligner: rapid and versatile sequence-to-graph alignment.

    Mikko Rautiainen;Mikko Rautiainen;Tobias Marschall

  • Fully phased human genome assembly without parental data using single-cell strand sequencing and long reads.

    David Porubsky;Peter Ebert;Peter A. Audano;Mitchell R. Vollger

  • Chromosome-scale, haplotype-resolved assembly of human genomes.

    Shilpa Garg;Arkarachai Fungtammasan;Andrew Carroll;Mike Chou

  • The complete sequence of a human genome

    Nurk S;Koren S;Rhie A;Rautiainen M

  • Viral Quasispecies Assembly via Maximal Clique Enumeration

    Armin Töpfer;Tobias Marschall;Rowena A. Bull;Fabio Luciani

  • Expectations and blind spots for structural variation detection from long-read assemblies and short-read genome sequencing technologies.

    Xuefang Zhao;Ryan L Collins;Wan-Ping Lee;Alexandra M Weber

  • CLEVER: clique-enumerating variant finder.

    Tobias Marschall;Ivan G. Costa;Stefan Canzar;Markus Bauer

  • A high-quality human reference panel reveals the complexity and distribution of genomic structural variants

    Jayne Y. Hehir-Kwa;Tobias Marschall;Wigard P. Kloosterman;Laurent C. Francioli

  • Dense and accurate whole-chromosome haplotyping of individual genomes.

    David Porubsky;David Porubsky;Shilpa Garg;Shilpa Garg;Ashley D. Sanders;Ashley D. Sanders;Jan O. Korbel

  • Single-cell analysis of structural variations and complex rearrangements with tri-channel processing

    Ashley D. Sanders;Sascha Meiers;Maryam Ghareghani;Maryam Ghareghani;David Porubsky;David Porubsky

  • Benchmarking challenging small variants with linked and long reads

    Justin Wagner;Nathan D Olson;Lindsay Harris;Ziad Khan

Frequent Co-Authors

Evan E. Eichler
Evan E. Eichler University of Washington
Jan O. Korbel
Jan O. Korbel European Molecular Biology Laboratory
Gunnar W. Klau
Gunnar W. Klau Heinrich Heine University Düsseldorf
Justin M. Zook
Justin M. Zook National Institute of Standards and Technology
Peter M. Lansdorp
Peter M. Lansdorp University of British Columbia
Fritz J. Sedlazeck
Fritz J. Sedlazeck Baylor College of Medicine
Michael E. Talkowski
Michael E. Talkowski Harvard University
Victor Guryev
Victor Guryev University Medical Center Groningen
Benedict Paten
Benedict Paten University of California, Santa Cruz
Michael C. Schatz
Michael C. Schatz Johns Hopkins University

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