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2025

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Genetics

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64
Citations
29444
World Ranking
2743
National Ranking
1205

Research.com Recognitions

  • 2025 - Research.com Rising Stars Award

Overview

Fritz J. Sedlazeck is affiliated with Baylor College of Medicine in the United States. Their research portfolio encompasses a wide range of topics within the field of Biochemistry, Genetics, and Molecular Biology, with a particular focus on Molecular Biology, Genetics, Cancer Research, Plant Science, and Infectious Diseases.

Their published work frequently appears in prominent scientific venues, primarily:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Nature Communications
  • Nature Biotechnology
  • Genome Research
  • Genome biology

Sedlazeck has contributed extensively to the study of genomics with particular interests in:

  • Genomics and Phylogenetic Studies
  • Genomics and Rare Diseases
  • Cancer Genomics and Diagnostics
  • Genomic variations and chromosomal abnormalities
  • Chromosomal and Genetic Variations
  • Genomics and Chromatin Dynamics
  • Molecular Biology Techniques and Applications

Among their recent papers are:

  • "The complete sequence of a human genome" (2022) published in Science
  • "Major Impacts of Widespread Structural Variation on Gene Expression and Crop Improvement in Tomato" (2020) published in Cell
  • "Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes" (2020) published in Nature Biotechnology
  • "Targeted nanopore sequencing with Cas9-guided adapter ligation" (2020) published in Nature Biotechnology
  • "A robust benchmark for detection of germline large deletions and insertions" (2020) published in Nature Biotechnology

Frequent collaborators in Sedlazeck's research include:

  • Medhat Mahmoud
  • Justin M. Zook
  • Luis F. Paulin
  • Richard A. Gibbs
  • Nathan D. Olson

The breadth of Sedlazeck's research reflects a strong emphasis on genomic structural variation and its applications to human health and crop science. Their publications in leading journals illuminate advances in sequencing technologies, genome assembly, and genomic variant benchmarking, contributing to fields such as cancer genomics and crop improvement.

Best Publications

  • Phased diploid genome assembly with single-molecule real-time sequencing

    Chen-Shan Chin;Paul Peluso;Fritz J Sedlazeck;Maria Nattestad

  • GenomeScope: fast reference-free genome profiling from short reads

    Gregory W Vurture;Fritz J Sedlazeck;Maria Nattestad;Charles J Underwood

  • Accurate detection of complex structural variations using single-molecule sequencing.

    Fritz J. Sedlazeck;Philipp Rescheneder;Moritz Smolka;Han Fang

  • Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome.

    Aaron M. Wenger;Paul Peluso;William J. Rowell;Pi-Chuan Chang

  • Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast.

    Daniel C. Jeffares;Clemency Jolly;Mimoza Hoti;Doug Speed

  • Major Impacts of Widespread Structural Variation on Gene Expression and Crop Improvement in Tomato.

    Michael Alonge;Xingang Wang;Matthias Benoit;Matthias Benoit;Sebastian Soyk

  • Structural variant calling: the long and the short of it

    Medhat Mahmoud;Nastassia Gobet;Nastassia Gobet;Diana Ivette Cruz-Dávalos;Diana Ivette Cruz-Dávalos;Ninon Mounier

  • The pineapple genome and the evolution of CAM photosynthesis

    Ray Ming;Ray Ming;Robert VanBuren;Robert VanBuren;Robert VanBuren;Ching Man Wai;Ching Man Wai;Haibao Tang;Haibao Tang

  • Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes.

    Kishwar Shafin;Trevor Pesout;Ryan Lorig-Roach;Marina Haukness

  • RaGOO: fast and accurate reference-guided scaffolding of draft genomes

    Michael Alonge;Sebastian Soyk;Srividya Ramakrishnan;Xingang Wang

  • Updating benchtop sequencing performance comparison

    Sebastian Jünemann;Sebastian Jünemann;Fritz Joachim Sedlazeck;Karola Prior;Andreas Albersmeier

  • Piercing the dark matter: bioinformatics of long-range sequencing and mapping

    Fritz J. Sedlazeck;Hayan Lee;Charlotte A. Darby;Michael C. Schatz;Michael C. Schatz

  • A robust benchmark for detection of germline large deletions and insertions.

    Justin M. Zook;Nancy F. Hansen;Nathan D. Olson;Lesley Chapman

  • NextGenMap: Fast and accurate read mapping in highly polymorphic genomes

    Fritz J. Sedlazeck;Philipp Rescheneder;Arndt von Haeseler

  • Targeted nanopore sequencing with Cas9-guided adapter ligation

    Timothy Gilpatrick;Isac Lee;James E Graham;Etienne Raimondeau

  • Towards population-scale long-read sequencing.

    Wouter De Coster;Matthias H. Weissensteiner;Fritz J. Sedlazeck

  • Chromosomal-level assembly of the Asian seabass genome using long sequence reads and multi-layered scaffolding

    Shubha Vij;Heiner Kuhl;Inna S. Kuznetsova;Inna S. Kuznetsova;Aleksey Komissarov

  • A multi-task convolutional deep neural network for variant calling in single molecule sequencing

    Ruibang Luo;Ruibang Luo;Fritz J. Sedlazeck;Tak-Wah Lam;Michael C. Schatz

  • Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line

    Maria Nattestad;Sara Goodwin;Karen Ng;Timour Baslan

  • Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing.

    Isac Lee;Roham Razaghi;Timothy Gilpatrick;Michael Molnar

Frequent Co-Authors

Michael C. Schatz
Michael C. Schatz Johns Hopkins University
Arndt von Haeseler
Arndt von Haeseler University of Vienna
Justin M. Zook
Justin M. Zook National Institute of Standards and Technology
Chen-Shan Chin
Chen-Shan Chin Pacific Biosciences (United States)
Tobias Marschall
Tobias Marschall Heinrich Heine University Düsseldorf
Zachary B. Lippman
Zachary B. Lippman Cold Spring Harbor Laboratory
Richard A. Gibbs
Richard A. Gibbs Baylor College of Medicine
Christopher E. Mason
Christopher E. Mason Cornell University
Eric Boerwinkle
Eric Boerwinkle The University of Texas Health Science Center at Houston
Jochen B. W. Wolf
Jochen B. W. Wolf Ludwig-Maximilians-Universität München

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