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D-Index & Metrics

Biology and Biochemistry

D-Index
55
Citations
14085
World Ranking
14857
National Ranking
6215

Overview

Timothy J. Griffin is affiliated with the University of Minnesota in the United States. Their research primarily spans the fields of Biochemistry, Genetics and Molecular Biology, with significant work in Medicine.

The main subfields of study that characterize their work include Molecular Biology, Spectroscopy, Infectious Diseases, Epidemiology, and Ecology. Their research topics cover a range of areas such as Advanced Proteomics Techniques and Applications, Metabolomics and Mass Spectrometry Studies, Genomics and Phylogenetic Studies, Mass Spectrometry Techniques and Applications, Microbial Community Ecology and Physiology, as well as SARS-CoV-2 detection and testing and broader COVID-19 research.

Frequent co-authors who have collaborated extensively with Timothy J. Griffin include:

  • Pratik Jagtap
  • Subina Mehta
  • James E. Johnson
  • Andrew T. Rajczewski
  • Praveen Kumar

Publishing venues where Timothy J. Griffin regularly contributes include:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Zenodo (CERN European Organization for Nuclear Research)
  • Journal of Proteome Research
  • Faculty of 1000 Research Ltd
  • F1000Research

Some of their recent papers are:

  • The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update (2022), Nucleic Acids Research
  • The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update (2024), Nucleic Acids Research
  • The Cancer Microbiome: Distinguishing Direct and Indirect Effects Requires a Systemic View (2020), Trends in Cancer
  • Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows (2021), Nature Communications
  • Galaxy Training: A powerful framework for teaching! (2023), PLoS Computational Biology

Best Publications

  • Insulin signalling to mTOR mediated by the Akt/PKB substrate PRAS40.

    Emilie Vander Haar;Seong il Lee;Sricharan Bandhakavi;Timothy J. Griffin

  • Complementary Profiling of Gene Expression at the Transcriptome and Proteome Levels in Saccharomyces cerevisiae

    Timothy J. Griffin;Steven P. Gygi;Trey Ideker;Beate Rist

  • Oxidative Stress and Covalent Modification of Protein with Bioactive Aldehydes

    Paul A. Grimsrud;Hongwei Xie;Timothy J. Griffin;David A. Bernlohr

  • Proteome analysis of low-abundance proteins using multidimensional chromatography and isotope-coded affinity tags.

    Steven P. Gygi;Beate Rist;Timothy J. Griffin;Jimmy Eng

  • Single-nucleotide Polymorphism Analysis by MALDI-TOF Mass Spectrometry

    Timothy J Griffin;Lloyd M Smith

  • Advances in Proteome Analysis by Mass Spectrometry

    Timothy J. Griffin;Ruedi Aebersold

  • Advances in proteome analysis by mass spectrometry

    Timothy J Griffin;David R Goodlett;Ruedi Aebersold

  • Carbonylation of Adipose Proteins in Obesity and Insulin Resistance Identification of Adipocyte Fatty Acid-binding Protein as a Cellular Target of 4-Hydroxynonenal

    Paul A. Grimsrud;Matthew J. Picklo;Timothy J. Griffin;David A. Bernlohr

  • Direct genetic analysis by matrix-assisted laser desorption/ionization mass spectrometry

    Timothy J. Griffin;Jeff G. Hall;James R. Prudent;Lloyd M. Smith

  • Systematic comparison of the human saliva and plasma proteomes

    Weihong Yan;Rolf Apweiler;Brian M Balgley;Pinmanee Boontheung

  • PRR5, a Novel Component of mTOR Complex 2, Regulates Platelet-derived Growth Factor Receptor β Expression and Signaling

    So Yon Woo;Dong Hwan Kim;Chang Bong Jun;Young Mi Kim

  • The Cancer Microbiome: Distinguishing Direct and Indirect Effects Requires a Systemic View

    Joao B. Xavier;Vincent B. Young;Joseph Skufca;Fiona Ginty

  • Quantitative proteomic analysis using a MALDI quadrupole time-of-flight mass spectrometer.

    Timothy J. Griffin;Steven P. Gygi;Steven P. Gygi;Beate Rist;Ruedi Aebersold;Ruedi Aebersold

  • A Dynamic Range Compression and Three-Dimensional Peptide Fractionation Analysis Platform Expands Proteome Coverage and the Diagnostic Potential of Whole Saliva

    Sricharan Bandhakavi;Matthew D. Stone;Getiria Onsongo;Susan K. Van Riper

  • A two-step database search method improves sensitivity in peptide sequence matches for metaproteomics and proteogenomics studies.

    Pratik Jagtap;Jill Goslinga;Joel A. Kooren;Thomas McGowan

  • A Catalogue of Human Saliva Proteins Identified by Free Flow Electrophoresis-based Peptide Separation and Tandem Mass Spectrometry

    Hongwei Xie;Nelson L. Rhodus;Robert J. Griffin;John V. Carlis

  • Gel-free mass spectrometry-based high throughput proteomics: Tools for studying biological response of proteins and proteomes

    Mikel R. Roe;Timothy J. Griffin

  • Genetic analysis by peptide nucleic acid affinity MALDI-TOF mass spectrometry

    Timothy J. Griffin;Wei Tang;Lloyd M. Smith

  • iTRAQ reagent-based quantitative proteomic analysis on a linear ion trap mass spectrometer

    Timothy J. Griffin;Hongwei Xie;Sricharan Bandhakavi;Jonathan Popko

  • Multi-omic data analysis using Galaxy

    Jorrit Boekel;John M Chilton;Ira R Cooke;Peter L Horvatovich

Frequent Co-Authors

James R. Johnson
James R. Johnson University of Minnesota
Lloyd M. Smith
Lloyd M. Smith University of Wisconsin–Madison
Lennart Martens
Lennart Martens Ghent University
Amy P.N. Skubitz
Amy P.N. Skubitz University of Minnesota
Steven P. Gygi
Steven P. Gygi Harvard University
Ola Larsson
Ola Larsson Science for Life Laboratory
Peter B. Bitterman
Peter B. Bitterman University of Minnesota
Wei Shou Hu
Wei Shou Hu University of Minnesota
Cavan S. Reilly
Cavan S. Reilly University of Minnesota

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