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Genetics

D-Index
48
Citations
57507
World Ranking
4012
National Ranking
1730

Overview

Richard Sandstrom is affiliated with the University of Washington in the United States. Their research primarily falls within the broad field of Biochemistry, Genetics, and Molecular Biology, with a specific focus on Molecular Biology, Genetics, and some work involving Artificial Intelligence.

The scientist's main topics of study involve diverse aspects of genomic science and chromatin dynamics. Key areas include:

  • Genomics and Chromatin Dynamics
  • Epigenetics and DNA Methylation
  • RNA Research and Splicing
  • RNA modifications and cancer
  • Single-cell and spatial transcriptomics
  • Genetic Mapping and Diversity in Plants and Animals
  • Chromatin Remodeling and Cancer

Richard Sandstrom has contributed to publications in several scientific venues, including:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Nature
  • Genome biology
  • Cell Reports
  • Stem Cell Reports

Their recent publications include:

  • Global reference mapping of human transcription factor footprints, 2020, Nature
  • Index and biological spectrum of human DNase I hypersensitive sites, 2020, Nature
  • The ENCODE Uniform Analysis Pipelines, 2023, bioRxiv (Cold Spring Harbor Laboratory)
  • The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles, 2023, Genome biology
  • Global Regulatory DNA Potentiation by SMARCA4 Propagates to Selective Gene Expression Programs via Domain-Level Remodeling, 2020, Cell Reports

The scientist frequently collaborates with other researchers, notably:

  • Kristen Lee
  • Jessica Halow
  • J Stamatoyannopoulos
  • Morgan Diegel
  • Fidencio Neri

Best Publications

  • Comprehensive mapping of long-range interactions reveals folding principles of the human genome.

    Erez Lieberman-Aiden;Nynke L. van Berkum;Louise Williams;Maxim Imakaev

  • Integrative analysis of 111 reference human epigenomes

    Anshul Kundaje;Wouter Meuleman;Wouter Meuleman;Jason Ernst

  • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

    Ewan Birney;John A. Stamatoyannopoulos;Anindya Dutta;Roderic Guigó

  • Systematic localization of common disease-associated variation in regulatory DNA.

    Matthew T. Maurano;Richard Humbert;Eric Rynes;Robert E. Thurman

  • Genetic effects on gene expression across human tissues.

    Enhancing GTEx (eGTEx) groups

  • The accessible chromatin landscape of the human genome

    Robert E. Thurman;Eric Rynes;Richard Humbert;Jeff Vierstra

  • An integrated encyclopedia of DNA elements in the human genome

    Ian Dunham;Anshul Kundaje;Shelley F. Aldred;Patrick J. Collins

  • A comparative encyclopedia of DNA elements in the mouse genome

    Feng Yue;Feng Yue;Yong Cheng;Alessandra Breschi;Jeff Vierstra

  • A User's Guide to the Encyclopedia of DNA Elements (ENCODE)

    Richard M. Myers;John Stamatoyannopoulos;Michael Snyder;Ian Dunham

  • Exploring the phenotypic consequences of tissue specific gene expression variation inferred from GWAS summary statistics.

    Alvaro N. Barbeira;Scott P. Dickinson;Rodrigo Bonazzola;Jiamao Zheng

  • Comprehensive analysis of the chromatin landscape in Drosophila melanogaster

    Peter V. Kharchenko;Artyom A. Alekseyenko;Artyom A. Alekseyenko;Yuri B. Schwartz;Aki Minoda

  • BEDOPS: high-performance genomic feature operations.

    Shane J. Neph;Scott Kuehn;Alex P. Reynolds;Eric Haugen

  • An expansive human regulatory lexicon encoded in transcription factor footprints

    Shane Neph;Jeff Vierstra;Andrew B. Stergachis;Alex P. Reynolds

  • Resolving the complexity of the human genome using single-molecule sequencing

    Mark J. P. Chaisson;John Huddleston;Megan Y. Dennis;Peter H. Sudmant

  • Global mapping of protein-DNA interactions in vivo by digital genomic footprinting

    Jay R. Hesselberth;Xiaoyu Chen;Zhihong Zhang;Zhihong Zhang;Peter J. Sabo

  • Widespread plasticity in CTCF occupancy linked to DNA methylation

    Hao Wang;Matthew T. Maurano;Hongzhu Qu;Hongzhu Qu;Katherine E. Varley

  • Sequencing newly replicated DNA reveals widespread plasticity in human replication timing

    R. Scott Hansen;Sean Thomas;Richard Sandstrom;Theresa K. Canfield

  • Cell-of-origin chromatin organization shapes the mutational landscape of cancer

    Paz Polak;Paz Polak;Rosa Karlić;Amnon Koren;Amnon Koren;Robert Thurman

  • Circuitry and dynamics of human transcription factor regulatory networks.

    Shane Neph;Andrew B. Stergachis;Alex Reynolds;Richard Sandstrom

  • Foxp3 Exploits a Pre-Existent Enhancer Landscape for Regulatory T Cell Lineage Specification

    Robert M. Samstein;Aaron Arvey;Steven Z. Josefowicz;Xiao Peng

Frequent Co-Authors

John A. Stamatoyannopoulos
John A. Stamatoyannopoulos University of Washington
Mark Groudine
Mark Groudine Fred Hutchinson Cancer Research Center
Rajinder Kaul
Rajinder Kaul University of Washington
Roderic Guigó
Roderic Guigó Pompeu Fabra University
Ross C. Hardison
Ross C. Hardison Pennsylvania State University
Kate R. Rosenbloom
Kate R. Rosenbloom University of California, Santa Cruz
Michael Snyder
Michael Snyder Stanford University
Bradley E. Bernstein
Bradley E. Bernstein Broad Institute
Evan E. Eichler
Evan E. Eichler University of Washington

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