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Biology and Biochemistry

D-Index
48
Citations
63980
World Ranking
18160
National Ranking
7419

Overview

Kate R. Rosenbloom is affiliated with the University of California, Santa Cruz in the United States. Their research primarily falls within the field of Biochemistry, Genetics, and Molecular Biology, with a focus on several subfields including Molecular Biology, Genetics, Infectious Diseases, Animal Science and Zoology, and Cancer Research.

The scientist's recent publications include work on genomic databases and viral genomics, with papers published in journals such as Nucleic Acids Research, Nature Genetics, bioRxiv, and Human Mutation. Notable papers include:

  • The UCSC Genome Browser database: 2021 update (2020, Nucleic Acids Research)
  • The UCSC Genome Browser database: 2022 update (2021, Nucleic Acids Research)
  • The UCSC SARS-CoV-2 Genome Browser (2020, Nature Genetics)
  • The UCSC SARS-CoV-2 Genome Browser (2020, bioRxiv)
  • Variant interpretation: UCSC Genome Browser Recommended Track Sets (2022, Human Mutation)

Their frequent co-authors include Jairo Navarro Gonzalez, Ann S. Zweig, Daniel Schmelter, Brian J. Raney, and Luis R Nassar, reflecting collaboration in the development and maintenance of genomic tools and data interpretation.

Kate R. Rosenbloom's research topics cover multiple areas such as:

  • Genomics and Phylogenetic Studies
  • Genomics and Rare Diseases
  • CRISPR and Genetic Engineering
  • SARS-CoV-2 and COVID-19 Research
  • Vaccines and Immunoinformatics Approaches
  • RNA Modifications and Cancer
  • RNA and Protein Synthesis Mechanisms

The scientist has published frequently in the following venues:

  • Nucleic Acids Research
  • Nature Genetics
  • bioRxiv (Cold Spring Harbor Laboratory)
  • Human Mutation

This body of work demonstrates a concentration on genomic databases and genome browser tools, as well as specialized analysis related to infectious diseases such as COVID-19. The combination of their work with genetic engineering, immunoinformatics, and rare disease genomics contributes to a multidisciplinary approach within the field of molecular biology and genetics.

Best Publications

  • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

    Ewan Birney;John A. Stamatoyannopoulos;Anindya Dutta;Roderic Guigó

  • The GTEx Consortium atlas of genetic regulatory effects across human tissues

    F Aguet;AN Barbeira;R Bonazzola;A Brown

  • Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

    Adam Siepel;Gill Bejerano;Jakob Skou Pedersen;Angie S Hinrichs

  • Genetic effects on gene expression across human tissues.

    Enhancing GTEx (eGTEx) groups

  • Aligning Multiple Genomic Sequences With the Threaded Blockset Aligner

    Mathieu Blanchette;W. James Kent;Cathy Riemer;Laura Elnitski

  • The ENCODE (ENCyclopedia of DNA elements) Project

    E. A. Feingold;P. J. Good;M. S. Guyer;S. Kamholz

  • An integrated encyclopedia of DNA elements in the human genome

    Ian Dunham;Anshul Kundaje;Shelley F. Aldred;Patrick J. Collins

  • Detection of nonneutral substitution rates on mammalian phylogenies

    Katherine S. Pollard;Melissa J. Hubisz;Kate R. Rosenbloom;Adam Siepel

  • Genome sequence of the Brown Norway rat yields insights into mammalian evolution

    Richard A. Gibbs;George M. Weinstock;Michael L. Metzker;Donna M. Muzny

  • Initial sequence of the chimpanzee genome and comparison with the human genome

    Tarjei S. Mikkelsen;LaDeana W. Hillier

  • A comparative encyclopedia of DNA elements in the mouse genome

    Feng Yue;Feng Yue;Yong Cheng;Alessandra Breschi;Jeff Vierstra

  • The UCSC Genome Browser database: update 2011

    Pauline A. Fujita;Brooke Rhead;Ann S. Zweig;Angie S. Hinrichs

  • The UCSC Genome Browser Database: update 2006

    A. S. Hinrichs;D. Karolchik;R. Baertsch;G. P. Barber

  • A User's Guide to the Encyclopedia of DNA Elements (ENCODE)

    Richard M. Myers;John Stamatoyannopoulos;Michael Snyder;Ian Dunham

  • Toil enables reproducible, open source, big biomedical data analyses

    John Vivian;Arjun Arkal Rao;Frank Austin Nothaft;Christopher Ketchum

  • Exploring the phenotypic consequences of tissue specific gene expression variation inferred from GWAS summary statistics.

    Alvaro N. Barbeira;Scott P. Dickinson;Rodrigo Bonazzola;Jiamao Zheng

  • The UCSC Genome Browser database: 2015 update

    Kate R. Rosenbloom;Joel Armstrong;Galt P. Barber;Jonathan Casper

  • The UCSC Genome Browser database: extensions and updates 2013.

    Laurence R. Meyer;Ann S. Zweig;Angie S. Hinrichs;Donna Karolchik

  • The UCSC Genome Browser database: 2014 update

    Donna Karolchik;Galt P. Barber;Jonathan Casper;Hiram Clawson

  • The UCSC Genome Browser database: update 2010

    Brooke L. Rhead;Donna Karolchik;Robert M. Kuhn;Angie S. Hinrichs

Frequent Co-Authors

David Haussler
David Haussler University of California, Santa Cruz
W. James Kent
W. James Kent University of California, Santa Cruz
Hiram Clawson
Hiram Clawson University of California, Santa Cruz
Brian J. Raney
Brian J. Raney University of California, Santa Cruz
Angie S. Hinrichs
Angie S. Hinrichs University of California, Santa Cruz
Robert M. Kuhn
Robert M. Kuhn University of California, Santa Cruz
Donna Karolchik
Donna Karolchik University of California, Santa Cruz
Mark Diekhans
Mark Diekhans University of California, Santa Cruz
Maximilian Haeussler
Maximilian Haeussler University of California, Santa Cruz

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