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Computer Science

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77
Citations
32553
World Ranking
1244
National Ranking
661

Biology and Biochemistry

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81
Citations
38708
World Ranking
3792
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Research.com Recognitions

  • 2014 - Fellow of the American Association for the Advancement of Science (AAAS)

Overview

Peter D. Karp is affiliated with SRI International in the United States. Their research primarily focuses on biochemistry, genetics, and molecular biology, with significant contributions in molecular biology, genetics, biomedical engineering, ecology, and renewable energy, sustainability, and the environment.

The scientist's work covers multiple topics, including:

  • Microbial Metabolic Engineering and Bioproduction
  • Bioinformatics and Genomic Networks
  • Genomics and Phylogenetic Studies
  • Metabolomics and Mass Spectrometry Studies
  • Gene Regulatory Network Analysis
  • Bacterial Genetics and Biotechnology
  • RNA and protein synthesis mechanisms

Peter D. Karp has published extensively across several journals. The most frequent publication venues are:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Frontiers in Microbiology
  • mSystems
  • Database
  • mBio

Among the frequent co-authors collaborating with this researcher are:

  • Suzanne Paley
  • Ron Caspi
  • Markus Krummenacker
  • Wai Kit Ong
  • Lisa R. Moore

Selected recent papers authored or co-authored by Peter D. Karp include:

  • Pathway size matters: the influence of pathway granularity on over-representation (enrichment analysis) statistics, 2021, BMC Genomics
  • SBML Level 3: an extensible format for the exchange and reuse of biological models, 2020, Molecular Systems Biology
  • The EcoCyc Database in 2021, 2021, Frontiers in Microbiology
  • Plant Metabolic Network 15: A resource of genome-wide metabolism databases for 126 plants and algae, 2021, Journal of Integrative Plant Biology
  • Simultaneous cross-evaluation of heterogeneous E. coli datasets via mechanistic simulation, 2020, Science

Peter D. Karp was recognized as a Fellow of the American Association for the Advancement of Science (AAAS) in 2014.

Best Publications

  • The complete genome sequence of the gastric pathogen Helicobacter pylori

    Jean-F. Tomb;Owen White;Anthony R. Kerlavage;Rebecca A. Clayton

  • The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

    Ron Caspi;Richard Billington;Luciana Ferrer;Hartmut Foerster

  • A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information.

    Adam M Feist;Christopher S Henry;Jennifer L Reed;Markus Krummenacker

  • The MetaCyc database of metabolic pathways and enzymes - a 2019 update.

    Ron Caspi;Richard Billington;Ingrid M. Keseler;Anamika Kothari

  • The Genome of the Natural Genetic Engineer Agrobacterium tumefaciens C58

    Derek W. Wood;Joao C. Setubal;Rajinder Kaul;Dave E. Monks

  • EcoCyc: a comprehensive database resource for Escherichia coli

    Ingrid M. Keseler;Julio Collado-Vides;Socorro Gama-Castro;John Ingraham

  • The BioCyc collection of microbial genomes and metabolic pathways.

    Peter D Karp;Richard Billington;Ron Caspi;Carol A Fulcher

  • The MetaCyc database of metabolic pathways and enzymes.

    Ron Caspi;Richard Billington;Carol A. Fulcher;Ingrid M. Keseler

  • The Pathway Tools software.

    Peter D. Karp;Suzanne M. Paley;Pedro Romero

  • The BioPAX community standard for pathway data sharing

    Emek Demir;Emek Demir;Michael P. Cary;Suzanne Paley;Ken Fukuda

  • Expansion of the BioCyc collection of pathway/genome databases to 160 genomes

    Peter D. Karp;Christos A. Ouzounis;Caroline Moore-Kochlacs;Leon Goldovsky

  • EcoCyc: fusing model organism databases with systems biology

    Ingrid M. Keseler;Amanda Mackie;Martín Peralta-Gil;Alberto Santos-Zavaleta

  • Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology

    Peter D. Karp;Suzanne M. Paley;Markus Krummenacker;Mario Latendresse

  • Computational prediction of human metabolic pathways from the complete human genome

    Pedro Romero;Pedro Romero;Jonathan Wagg;Michelle L Green;Dale Kaiser

  • The EcoCyc Database

    Peter D. Karp;Monica Riley;Milton Saier;Ian T. Paulsen

  • EcoCyc: a comprehensive database of Escherichia coli biology

    Ingrid M. Keseler;Julio Collado-Vides;Alberto Santos-Zavaleta;Martín Peralta-Gil

  • MetaCyc: a multiorganism database of metabolic pathways and enzymes

    Ron Caspi;Hartmut Foerster;Carol A. Fulcher;Rebecca Hopkinson

  • The EcoCyc database: reflecting new knowledge about Escherichia coli K-12.

    Ingrid M. Keseler;Amanda Mackie;Alberto Santos-Zavaleta;Richard Billington

  • The complete genome sequence of Francisella tularensis, the causative agent of tularemia.

    Pär Larsson;Petra C F Oyston;Patrick Chain;May C Chu

  • The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

    Unknown

  • OKBC: a programmatic foundation for knowledge base interoperability

    Vinay K. Chaudhri;Adam Farquhar;Richard Fikes;Peter D. Karp

Frequent Co-Authors

Suzanne M. Paley
Suzanne M. Paley SRI International
Markus Krummenacker
Markus Krummenacker SRI International
Ian T. Paulsen
Ian T. Paulsen Macquarie University
Julio Collado-Vides
Julio Collado-Vides National Autonomous University of Mexico
Pedro Romero
Pedro Romero University of Lausanne
Pardis C. Sabeti
Pardis C. Sabeti Harvard University
Chris Sander
Chris Sander Harvard University
Christos A. Ouzounis
Christos A. Ouzounis Aristotle University of Thessaloniki
Edgar Wingender
Edgar Wingender University of Göttingen
Peter D'Eustachio
Peter D'Eustachio New York University

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