D-Index & Metrics Best Publications

D-Index & Metrics D-index (Discipline H-index) only includes papers and citation values for an examined discipline in contrast to General H-index which accounts for publications across all disciplines.

Discipline name D-index D-index (Discipline H-index) only includes papers and citation values for an examined discipline in contrast to General H-index which accounts for publications across all disciplines. Citations Publications World Ranking National Ranking
Genetics D-index 100 Citations 61,354 365 World Ranking 468 National Ranking 243

Research.com Recognitions

Awards & Achievements

2013 - Fellow of the Indian National Academy of Engineering (INAE)

Overview

What is he best known for?

The fields of study he is best known for:

  • Gene
  • Enzyme
  • DNA

His primary scientific interests are in Genetics, Gene, Computational biology, Genome and Operon. Regulatory sequence, Promoter, RNA, Regulon and Regulation of gene expression are subfields of Genetics in which his conducts study. His Gene research is multidisciplinary, incorporating elements of Shewanella oneidensis and Bacillus subtilis.

His Computational biology research incorporates elements of Regulator gene, Cellular functions, Characterization, ENCODE and Gene regulatory network. The Genome study combines topics in areas such as DNA microarray and Metagenomics. Adam P. Arkin combines subjects such as Hydrogenase, Electron transport chain, Lactate oxidation and Lactate transport with his study of Operon.

His most cited work include:

  • FastTree 2--approximately maximum-likelihood trees for large alignments. (6053 citations)
  • FastTree 2--approximately maximum-likelihood trees for large alignments. (6053 citations)
  • Functional profiling of the Saccharomyces cerevisiae genome. (3578 citations)

What are the main themes of his work throughout his whole career to date?

Genetics, Gene, Computational biology, Biochemistry and Genome are his primary areas of study. His work in Regulation of gene expression, Gene expression, Phenotype, Operon and Regulon is related to Genetics. His Gene study frequently draws connections to adjacent fields such as DNA.

The concepts of his Computational biology study are interwoven with issues in RNA, CRISPR and Function. He works mostly in the field of Biochemistry, limiting it down to concerns involving Desulfovibrio vulgaris and, occasionally, Desulfovibrio. His Metagenomics research extends to the thematically linked field of Genome.

He most often published in these fields:

  • Genetics (45.39%)
  • Gene (41.45%)
  • Computational biology (33.74%)

What were the highlights of his more recent work (between 2017-2021)?

  • Computational biology (33.74%)
  • Gene (41.45%)
  • Genome (25.57%)

In recent papers he was focusing on the following fields of study:

His main research concerns Computational biology, Gene, Genome, Biochemistry and Microbial population biology. His research on Computational biology also deals with topics like

  • CRISPR and related Effector,
  • Escherichia coli most often made with reference to Function. His Gene research entails a greater understanding of Genetics.

His study on Genome also encompasses disciplines like

  • Metagenomics, which have a strong connection to Ribosomal RNA and Synteny,
  • Phylum that intertwine with fields like RNA. Adam P. Arkin has included themes like Environmental chemistry, Ecology and Community structure in his Microbial population biology study. His work on Saccharomyces cerevisiae as part of his general Yeast study is frequently connected to D-Galacturonic acid, thereby bridging the divide between different branches of science.

Between 2017 and 2021, his most popular works were:

  • KBase: The United States Department of Energy Systems Biology Knowledgebase. (297 citations)
  • KBase: The United States Department of Energy Systems Biology Knowledgebase. (297 citations)
  • Mutant phenotypes for thousands of bacterial genes of unknown function (224 citations)

In his most recent research, the most cited papers focused on:

  • Gene
  • Enzyme
  • DNA

His primary areas of study are Computational biology, Gene, CRISPR, Genome and Mutant. His research in Computational biology intersects with topics in Eukaryotic translation and DNA sequencing. His work carried out in the field of Gene brings together such families of science as Catabolism and DNA.

His work investigates the relationship between CRISPR and topics such as Effector that intersect with problems in Circular permutation in proteins, Bacteriophage, Chemical biology, Mobile genetic elements and Evolutionary pressure. His studies in Genome integrate themes in fields like Evolutionary biology, Phylogenetic diversity, Phylum and Metagenomics. His Mutant study is related to the wider topic of Genetics.

This overview was generated by a machine learning system which analysed the scientist’s body of work. If you have any feedback, you can contact us here.

Best Publications

FastTree 2--approximately maximum-likelihood trees for large alignments.

Morgan N. Price;Paramvir S. Dehal;Adam P. Arkin;Adam P. Arkin.
PLOS ONE (2010)

9312 Citations

Functional profiling of the Saccharomyces cerevisiae genome.

Guri Giaever;Angela M. Chu;Li Ni;Carla Connelly.
Nature (2002)

4738 Citations

Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression.

Lei S. Qi;Matthew H. Larson;Luke A. Gilbert;Jennifer A. Doudna.
Cell (2013)

4399 Citations

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models.

M. Hucka;A. Finney;H. M. Sauro;H. Bolouri;H. Bolouri.
Bioinformatics (2003)

3662 Citations

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

Morgan N. Price;Paramvir S. Dehal;Adam P. Arkin;Adam P. Arkin.
Molecular Biology and Evolution (2009)

3509 Citations

Stochastic mechanisms in gene expression

Harley H. McAdams;Adam Arkin.
Proceedings of the National Academy of Sciences of the United States of America (1997)

2346 Citations

STOCHASTIC KINETIC ANALYSIS OF DEVELOPMENTAL PATHWAY BIFURCATION IN PHAGE LAMBDA -INFECTED ESCHERICHIA COLI CELLS

Adam Arkin;John Ross;Harley H. McAdams.
Genetics (1998)

2073 Citations

It’s a noisy business! Genetic regulation at the nanomolar scale

Harley H McAdams;Adam Arkin.
Trends in Genetics (1999)

1266 Citations

Control, exploitation and tolerance of intracellular noise

Christopher V. Rao;Denise M. Wolf;Adam P. Arkin.
Nature (2002)

1247 Citations

Stochastic chemical kinetics and the quasi-steady-state assumption: Application to the Gillespie algorithm

Christopher V. Rao;Adam P. Arkin.
Journal of Chemical Physics (2003)

792 Citations

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