Eric J. Alm

Overview

Best Publications

• Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

  Evan Bolyen;Jai Ram Rideout;Matthew R. Dillon;Nicholas A. Bokulich

  21851
  Citations

• Structure, function and diversity of the healthy human microbiome

  Curtis Huttenhower;Curtis Huttenhower;Dirk Gevers;Rob Knight;Rob Knight;Sahar Abubucker

  10953
  Citations

• Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.

  Evan Bolyen;Jai Ram Rideout;Matthew R. Dillon;Nicholas A. Bokulich

  4019
  Citations

• A framework for human microbiome research

  Barbara A. Methé;Karen E. Nelson;Mihai Pop;Heather H. Creasy

  2698
  Citations

• Inferring Correlation Networks from Genomic Survey Data

  Jonathan Friedman;Eric J. Alm;Eric J. Alm

  2082
  Citations

• Salt-responsive gut commensal modulates TH17 axis and disease

  Nicola Wilck;Mariana G. Matus;Sean M. Kearney;Scott W. Olesen

  1298
  Citations

• QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

  Evan Bolyen;Jai Ram Rideout;Matthew R Dillon;Nicholas A Bokulich

  992
  Citations

• Host lifestyle affects human microbiota on daily timescales.

  Lawrence A David;Lawrence A David;Arne C Materna;Jonathan Friedman;Maria I Campos-Baptista

  978
  Citations

• Ecology drives a global network of gene exchange connecting the human microbiome

  Chris S. Smillie;Mark B. Smith;Jonathan Friedman;Otto X. Cordero

  976
  Citations

• Meta-analysis of gut microbiome studies identifies disease-specific and shared responses.

  Claire Duvallet;Sean M. Gibbons;Sean M. Gibbons;Thomas Gurry;Thomas Gurry;Rafael A. Irizarry

  891
  Citations

• Correlation detection strategies in microbial data sets vary widely in sensitivity and precision

  Sophie Weiss;Will Van Treuren;Catherine Lozupone;Karoline Faust;Karoline Faust

  846
  Citations

• SARS-CoV-2 Titers in Wastewater Are Higher than Expected from Clinically Confirmed Cases

  Fuqing Wu;Jianbo Zhang;Amy Xiao;Xiaoqiong Gu

  795
  Citations

• MicrobesOnline: an integrated portal for comparative and functional genomics

  Paramvir S. Dehal;Marcin P. Joachimiak;Morgan N. Price;John T. Bates

  635
  Citations

• Environmental genomics reveals a single-species ecosystem deep within Earth.

  Dylan Chivian;Eoin L. Brodie;Eric J. Alm;David E. Culley

  629
  Citations

• Fecal microbiota transplant from a rational stool donor improves hepatic encephalopathy: A randomized clinical trial

  Jasmohan S. Bajaj;Zain Kassam;Andrew Fagan;Edith A. Gavis

  587
  Citations

• Resource partitioning and sympatric differentiation among closely related bacterioplankton.

  Dana E. Hunt;Lawrence A. David;Dirk Gevers;Dirk Gevers;Sarah P. Preheim

  573
  Citations

• Population genomics of early events in the ecological differentiation of bacteria.

  B. Jesse Shapiro;B. Jesse Shapiro;Jonathan Friedman;Otto X. Cordero;Sarah P. Preheim

  566
  Citations

• Fecal Microbiota Transplant for Relapsing Clostridium difficile Infection Using a Frozen Inoculum From Unrelated Donors: A Randomized, Open-Label, Controlled Pilot Study

  Ilan Youngster;Jenny Sauk;Christina Pindar;Robin G. Wilson

  554
  Citations

• The Bacterial Species Challenge: Making Sense of Genetic and Ecological Diversity

  Christophe Fraser;Eric J. Alm;Eric J. Alm;Martin F. Polz;Brian G. Spratt

  512
  Citations

• Critical role of β-hairpin formation in protein G folding

  Erika L. McCallister;Eric Alm;David Baker

  487
  Citations