World's Best Scientists 2026 revealed!

D-Index & Metrics

Computer Science

D-Index
53
Citations
19341
World Ranking
4695
National Ranking
2181

Research.com Recognitions

  • 2015 - Fellow of the American Association for the Advancement of Science (AAAS)
  • 2000 - Fellow of the MacArthur Foundation

Overview

Erik Winfree is affiliated with the California Institute of Technology in the United States. Their research primarily spans the fields of Biochemistry, Genetics and Molecular Biology, as well as Neuroscience. Within these main fields, their work focuses on Molecular Biology, Cognitive Neuroscience, Cellular and Molecular Neuroscience, Mechanical Engineering, and Electrical and Electronic Engineering.

The scientist's research covers several main topics, including:

  • Advanced biosensing and bioanalysis techniques
  • Neural dynamics and brain function
  • DNA and Biological Computing
  • Gene Regulatory Network Analysis
  • Photoreceptor and optogenetics research
  • DNA and Nucleic Acid Chemistry
  • Modular Robots and Swarm Intelligence

Erik Winfree has published extensively, with frequent contributions in venues such as:

  • arXiv (Cornell University)
  • Nature
  • Journal of The Royal Society Interface
  • Computational Biology and Chemistry
  • Theoretical Computer Science

Among recent papers, notable examples include:

  • "Pattern recognition in the nucleation kinetics of non-equilibrium self-assembly" (2024, Nature)
  • "Programming and simulating chemical reaction networks on a surface" (2020, Journal of The Royal Society Interface)
  • "Pattern recognition in the nucleation kinetics of non-equilibrium self-assembly" (2022, arXiv (Cornell University))
  • "Detailed Balanced Chemical Reaction Networks as Generalized Boltzmann Machines" (2022, arXiv (Cornell University))
  • "Predicting DNA kinetics with a truncated continuous-time Markov chain method" (2023, Computational Biology and Chemistry)

Frequent co-authors who have collaborated with Winfree include:

  • Constantine G. Evans
  • Jackson O'Brien
  • Arvind Murugan
  • Lulu Qian
  • Sedigheh Zolaktaf

Erik Winfree has received recognition in the form of fellowships, including being named a Fellow of the American Association for the Advancement of Science (AAAS) in 2015 and a Fellow of the MacArthur Foundation in 2000.

Best Publications

  • Scaling Up Digital Circuit Computation with DNA Strand Displacement Cascades

    Lulu Qian;Erik Winfree

  • Neural network computation with DNA strand displacement cascades

    Lulu Qian;Erik Winfree;Jehoshua Bruck

  • Algorithmic self-assembly of DNA Sierpinski triangles.

    Paul W. K Rothemund;Nick Papadakis;Erik Winfree

  • Molecular robots guided by prescriptive landscapes

    Kyle Lund;Anthony J. Manzo;Nadine Dabby;Nicole Michelotti

  • DNA as a Universal Substrate for Chemical Kinetics

    David Soloveichik;Georg Seelig;Erik Winfree

  • Construction, analysis, ligation, and self-assembly of DNA triple crossover complexes

    Thomas H. LaBean;Hao Yan;Jens Kopatsch;Furong Liu

  • Algorithmic Self-Assembly of DNA

    E. Winfree

  • Self-assembly of carbon nanotubes into two-dimensional geometries using DNA origami templates

    Hareem T. Maune;Si-ping Han;Robert D. Barish;Marc Bockrath

  • The program-size complexity of self-assembled squares (extended abstract)

    Paul W. K. Rothemund;Erik Winfree

  • A cargo-sorting DNA robot.

    Anupama J. Thubagere;Wei Li;Robert F. Johnson;Zibo Chen

  • The program-size complexity of self-assembled squares

    Paul W. K. Rothemund;Erik Winfree

  • A Simple DNA Gate Motif for Synthesizing Large-Scale Circuits

    Lulu Qian;Erik Winfree

  • A sticker-based model for DNA computation.

    Sam T. Roweis;Erik Winfree;Richard Burgoyne;Nickolas V. Chelyapov

  • A simple DNA gate motif for synthesizing large-scale circuits.

    Lulu Qian;Erik Winfree

  • Enzyme-free nucleic acid dynamical systems.

    Niranjan Srinivas;James Parkin;Georg Seelig;Erik Winfree

  • An autonomous polymerization motor powered by DNA hybridization.

    Suvir Venkataraman;Robert M. Dirks;Paul W. K. Rothemund;Erik Winfree

  • Protein Design is NP-hard

    Niles A. Pierce;Erik Winfree

  • Complexity of Self-Assembled Shapes

    David Soloveichik;Erik Winfree

  • Two Computational Primitives for Algorithmic Self-Assembly: Copying and Counting

    Robert D. Barish;Paul W. K. Rothemund;Erik Winfree

  • An information-bearing seed for nucleating algorithmic self-assembly

    Robert D. Barish;Rebecca Schulman;Paul W. K. Rothemund;Erik Winfree

  • Computation with finite stochastic chemical reaction networks

    David Soloveichik;Matthew Cook;Erik Winfree;Jehoshua Bruck

  • Universal Computation via Self-assembly of DNA: Some Theory and Experiments

    Erik Winfree;Xiaoping Yang;Nadrian C. Seeman

Frequent Co-Authors

David Zhang
David Zhang Chinese University of Hong Kong, Shenzhen
Georg Seelig
Georg Seelig University of Washington
Niles A. Pierce
Niles A. Pierce California Institute of Technology
Sam T. Roweis
Sam T. Roweis New York University
Anne Condon
Anne Condon University of British Columbia
Marc Bockrath
Marc Bockrath The Ohio State University
Leonard M. Adleman
Leonard M. Adleman University of Southern California
Satoshi Murata
Satoshi Murata Tohoku University
Friedrich C. Simmel
Friedrich C. Simmel Technical University of Munich
Hao Yan
Hao Yan Arizona State University

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