2026 Jennifer Listgarten: Engineering and Technology Researcher – H-Index, Publications & Awards

Discipline name	D-Index	World Ranking	Current World Ranking	National Ranking	Current National Ranking	Publications	Citations
Engineering and Technology	32	9497	9137	2674	2468	76	11654

Overview

Jennifer Listgarten is affiliated with the University of California, Berkeley in the United States. Their research primarily spans the fields of Biochemistry, Genetics, and Molecular Biology, with a total of 51 publications contributing to this area.

The subfields of study Jennifer Listgarten works in include:

Molecular Biology
Genetics
Artificial Intelligence
Computational Theory and Mathematics
Materials Chemistry

The key topics addressed in their research are:

RNA and protein synthesis mechanisms
Genomics and Phylogenetic Studies
CRISPR and Genetic Engineering
Computational Drug Discovery Methods
Protein Structure and Dynamics
Evolution and Genetic Dynamics
Virus-based gene therapy research

Jennifer Listgarten has published extensively in various scientific venues. Frequent publication venues include:

bioRxiv (Cold Spring Harbor Laboratory)
arXiv (Cornell University)
Proceedings of the National Academy of Sciences
Nature Biotechnology
Science Advances

Selected recent papers authored or co-authored by Jennifer Listgarten include:

"On the sparsity of fitness functions and implications for learning," 2021, Proceedings of the National Academy of Sciences
"Epistatic Net allows the sparse spectral regularization of deep neural networks for inferring fitness functions," 2021, Nature Communications
"Optimal trade-off control in machine learning-based library design, with application to adeno-associated virus (AAV) for gene therapy," 2024, Science Advances
"Conformal prediction under feedback covariate shift for biomolecular design," 2022, Proceedings of the National Academy of Sciences
"Combining evolutionary and assay-labelled data for protein fitness prediction," 2021, bioRxiv (Cold Spring Harbor Laboratory)

Frequent co-authors working with Jennifer Listgarten include:

Clara Fannjiang
Hunter Nisonoff
Chloe Hsu
David H. Brookes
Akosua Busia

Best Publications

Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9

John G Doench;Nicolo Fusi;Meagan Sullender;Mudra Hegde

4888
Citations
FaST linear mixed models for genome-wide association studies.

Christoph Lippert;Jennifer Listgarten;Ying Liu;Carl M Kadie

1435
Citations
Rethinking drug design in the artificial intelligence era

Petra Schneider;W. Patrick Walters;Alleyn T. Plowright;Norman Sieroka

757
Citations
Improved linear mixed models for genome-wide association studies

Jennifer Listgarten;Christoph Lippert;Carl M Kadie;Robert I Davidson

441
Citations
Statistical and Computational Methods for Comparative Proteomic Profiling Using Liquid Chromatography-Tandem Mass Spectrometry

Jennifer Listgarten;Andrew Emili

381
Citations
Prediction of off-target activities for the end-to-end design of CRISPR guide RNAs

Jennifer Listgarten;Michael Weinstein;Benjamin P. Kleinstiver;Alexander A. Sousa

343
Citations
Orthologous CRISPR-Cas9 enzymes for combinatorial genetic screens.

Fadi J Najm;Christine Strand;Katherine F Donovan;Mudra Hegde

296
Citations
Epigenome-wide association studies without the need for cell-type composition

James Zou;Christoph Lippert;David Heckerman;Martin Aryee

263
Citations
Correction for hidden confounders in the genetic analysis of gene expression

Jennifer Listgarten;Carl Kadie;Eric E. Schadt;David Heckerman

221
Citations
Additive Contribution of HLA Class I Alleles in the Immune Control of HIV-1 Infection

Alasdair Leslie;Philippa C. Matthews;Jennifer Listgarten;Jonathan M. Carlson

204
Citations
A genome-to-genome analysis of associations between human genetic variation, HIV-1 sequence diversity, and viral control

István Bartha;Jonathan M Carlson;Chanson J Brumme;Paul J McLaren;Paul J McLaren;Paul J McLaren

198
Citations
Lymphovascular invasion is associated with poor survival in gastric cancer: an application of gene-expression and tissue array techniques.

Bryan J. Dicken;Kathryn Graham;Stewart M. Hamilton;Sam Andrews

183
Citations
Multiple Alignment of Continuous Time Series

Jennifer Listgarten;Radford M. Neal;Sam T. Roweis;Andrew Emili

181
Citations
Widespread Impact of HLA Restriction on Immune Control and Escape Pathways of HIV-1

Jonathan M. Carlson;Jennifer Listgarten;Nico Pfeifer;Vincent Tan

146
Citations
let-7 miRNAs Can Act through Notch to Regulate Human Gliogenesis

M. Patterson;X. Gaeta;K. Loo;M. Edwards

126
Citations
Leveraging information across HLA alleles/supertypes improves epitope prediction.

David Heckerman;Carl Myers Kadie;Jennifer Listgarten

109
Citations
A powerful and efficient set test for genetic markers that handles confounders

Jennifer Listgarten;Christoph Lippert;Eun Yong Kang;Jing Xiang

106
Citations
Difference detection in LC-MS data for protein biomarker discovery

Jennifer Listgarten;Radford M. Neal;Sam T. Roweis;Peter Wong

97
Citations
FaST-LMM-Select for addressing confounding from spatial structure and rare variants

Jennifer Listgarten;Christoph Lippert;David Heckerman

95
Citations
An Exhaustive Epistatic SNP Association Analysis on Expanded Wellcome Trust Data

Christoph Lippert;Jennifer Listgarten;Robert I Davidson;Scott Baxter

91
Citations
Conditioning by adaptive sampling for robust design

David H. Brookes;Hahnbeom Park;Jennifer Listgarten

65
Citations
HLA-A*7401–Mediated Control of HIV Viremia Is Independent of Its Linkage Disequilibrium with HLA-B*5703

Philippa C. Matthews;Emily Adland;Jennifer Listgarten;Alasdair Leslie

64
Citations
Gaussian Process Prior Variational Autoencoders

Francesco Paolo Casale;Adrian V. Dalca;Luca Saglietti;Jennifer Listgarten

45
Citations
Design by adaptive sampling.

David H. Brookes;Jennifer Listgarten

32
Citations
Correction for Hidden Confounders in the Genetic Analysis of Gene Expression (Abstract).

Jennifer Listgarten;Carl Myers Kadie;Eric E. Schadt;David Heckerman

0
Citations