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Adrian R. Ferré-D'Amaré

Adrian R. Ferré-D'Amaré

D-Index & Metrics

Biology and Biochemistry

D-Index
68
Citations
16533
World Ranking
7788
National Ranking
3545

Overview

What is he best known for?

The fields of study he is best known for:

  • DNA
  • Gene
  • Enzyme

His primary areas of study are RNA, Biochemistry, Stereochemistry, Riboswitch and Ribozyme. His study in the field of Ribonucleoprotein is also linked to topics like Nucleolus. His Stereochemistry research is multidisciplinary, incorporating perspectives in Crystallography, Basic helix-loop-helix, Leucine zipper and DNA.

His studies deal with areas such as Cobalamin riboswitch, TPP riboswitch and Thiamine as well as Riboswitch. The concepts of his Ribozyme study are interwoven with issues in Cleavage and Active site. His work in Hairpin ribozyme addresses subjects such as VS ribozyme, which are connected to disciplines such as GIR1 branching ribozyme and Mammalian CPEB3 ribozyme.

His most cited work include:

  • Crystal structure of a hepatitis delta virus ribozyme (614 citations)
  • Recognition by Max of its cognate DNA through a dimeric b/HLH/Z domain. (601 citations)
  • Molecular basis of mouse microphthalmia ( mi ) mutations helps explain their developmental and phenotypic consequences (430 citations)

What are the main themes of his work throughout his whole career to date?

Adrian R. Ferré-D'Amaré spends much of his time researching RNA, Riboswitch, Biochemistry, Ribozyme and Stereochemistry. His RNA study combines topics from a wide range of disciplines, such as Crystallography, Biophysics, Aptamer, Computational biology and Binding site. His research investigates the connection between Crystallography and topics such as Crystallization that intersect with issues in RNA-binding protein.

The study incorporates disciplines such as Nucleic acid structure, Cobalamin riboswitch and Small molecule in addition to Riboswitch. Cleavage is closely connected to Active site in his research, which is encompassed under the umbrella topic of Ribozyme. His study in GlmS glucosamine-6-phosphate activated ribozyme is interdisciplinary in nature, drawing from both Cofactor and GIR1 branching ribozyme.

He most often published in these fields:

  • RNA (65.33%)
  • Riboswitch (44.00%)
  • Biochemistry (31.33%)

What were the highlights of his more recent work (between 2017-2021)?

  • RNA (65.33%)
  • Aptamer (16.00%)
  • Riboswitch (44.00%)

In recent papers he was focusing on the following fields of study:

RNA, Aptamer, Riboswitch, Biophysics and Crystal structure are his primary areas of study. Adrian R. Ferré-D'Amaré has researched RNA in several fields, including G-quadruplex, Transcription and Stereochemistry. His work deals with themes such as Nucleobase and Riboside, which intersect with Stereochemistry.

The various areas that he examines in his Aptamer study include Nucleotide, Base pair, Fluorophore, Combinatorial chemistry and Binding site. His Riboswitch research includes elements of Computational biology and Small molecule. His Small molecule research is included under the broader classification of Biochemistry.

Between 2017 and 2021, his most popular works were:

  • Structural basis of G-quadruplex unfolding by the DEAH/RHA helicase DHX36 (105 citations)
  • RNA G-quadruplex is resolved by repetitive and ATP-dependent mechanism of DHX36 (28 citations)
  • Crystal Structures of the Mango-II RNA Aptamer Reveal Heterogeneous Fluorophore Binding and Guide Engineering of Variants with Improved Selectivity and Brightness. (26 citations)

In his most recent research, the most cited papers focused on:

  • DNA
  • Gene
  • Enzyme

His scientific interests lie mostly in RNA, Aptamer, Biophysics, Fluorophore and Binding site. His RNA research integrates issues from Stereochemistry and Crystal structure. His studies deal with areas such as Nucleobase, Selectivity, Bacterial transcription and Mutant as well as Stereochemistry.

His Aptamer research incorporates themes from Nucleotide and Small molecule. His Riboswitch study combines topics in areas such as Nucleic acid tertiary structure, Computational biology and PreQ1 riboswitch. His DHX36 research is multidisciplinary, incorporating elements of A-DNA, Polymerase, Transcription and Cell biology.

Best Publications

  • Crystal structure of a hepatitis delta virus ribozyme

    Adrian R. Ferré-D'Amaré;Kaihong Zhou;Jennifer A. Doudna;Jennifer A. Doudna

  • Recognition by Max of its cognate DNA through a dimeric b/HLH/Z domain.

    Adrian R. Ferré-D'Amaré;George C. Prendergast;George C. Prendergast;Edward B. Ziff;Stephen K. Burley;Stephen K. Burley

  • Molecular basis of mouse microphthalmia ( mi ) mutations helps explain their developmental and phenotypic consequences

    Eiríkur Steingrímsson;Karen J. Moore;M. Lynn Lamoreux;Adrian R. Ferré-D'Amaré

  • Crystal structure of a hairpin ribozyme–inhibitor complex with implications for catalysis

    Peter B. Rupert;Adrian R. Ferré-D'Amaré

  • Structure and function of the b/HLH/Z domain of USF.

    A.R. Ferré-D'Amaré;P. Pognonec;R.G. Roeder;S.K. Burley

  • The structure and function of small nucleolar ribonucleoproteins

    Steve L. Reichow;Tomoko Hamma;Adrian R. Ferré-D'Amaré;Gabriele Varani

  • Structural basis of glmS ribozyme activation by glucosamine-6-phosphate

    Daniel J. Klein;Adrian R. Ferré-D'Amaré

  • Structural basis for activity of highly efficient RNA mimics of green fluorescent protein

    Katherine Deigan Warner;Michael C Chen;Wenjiao Song;Rita L Strack

  • Transition State Stabilization by a Catalytic RNA

    Peter B. Rupert;Archna P. Massey;Snorri Th. Sigurdsson;Adrian R. Ferré-D'Amaré

  • Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallography

    J. R. Stagno;Y. Liu;Y. R. Bhandari;C. E. Conrad

  • Cocrystal structure of a tRNA Psi55 pseudouridine synthase: nucleotide flipping by an RNA-modifying enzyme.

    Charmaine Hoang;Adrian R. Ferré-D'Amaré

  • Crystal Structures of the Thi-Box Riboswitch Bound to Thiamine Pyrophosphate Analogs Reveal Adaptive RNA-Small Molecule Recognition

    Thomas E. Edwards;Adrian R. Ferré-D'Amaré

  • TOTAL CHEMICAL SYNTHESIS OF A UNIQUE TRANSCRIPTION FACTOR-RELATED PROTEIN : CMYC-MAX

    Lynne E. Canne;Adrian R. Ferré-D'Amaré;Stephen Burley;Stephen B.H. Kent

  • Structural basis of G-quadruplex unfolding by the DEAH/RHA helicase DHX36

    Michael C Chen;Ramreddy Tippana;Natalia A Demeshkina;Pierre Murat

  • Riboswitches: discovery of drugs that target bacterial gene-regulatory RNAs.

    Katherine E Deigan;Adrian R Ferré-D'Amaré

  • A specific monovalent metal ion integral to the AA platform of the RNA tetraloop receptor

    Soumitra Basu;Robert P. Rambo;Juliane Strauss-Soukup;Jamie H. Cate;Jamie H. Cate

  • Small Self-cleaving Ribozymes

    Adrian R. Ferré-D'Amaré;William G. Scott

  • Recognition of the bacterial second messenger cyclic diguanylate by its cognate riboswitch.

    Nadia Kulshina;Nathan J Baird;Adrian R Ferré-D'Amaré;Adrian R Ferré-D'Amaré

  • Rapid Construction of Empirical RNA Fitness Landscapes

    Jason N. Pitt;Adrian R. Ferré-D’Amaré

  • Probing the solution structure of the DNA‐binding protein Max by a combination of proteolysis and mass spectrometry

    Steven L. Cohen;Brian T. Chait;Adrian R. Ferré-D'Amaré;Stephen K. Burley;Stephen K. Burley

Frequent Co-Authors

Stephen K. Burley
Stephen K. Burley Rutgers, The State University of New Jersey
Jennifer A. Doudna
Jennifer A. Doudna University of California, Berkeley
Sua Myong
Sua Myong Johns Hopkins University
Peter J. Murray
Peter J. Murray Max Planck Society
Taekjip Ha
Taekjip Ha Johns Hopkins University
Michael D. Been
Michael D. Been Duke University
Sarah A. Woodson
Sarah A. Woodson Johns Hopkins University
Henry N. Chapman
Henry N. Chapman Universität Hamburg
Petra Fromme
Petra Fromme Arizona State University

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