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Biology and Biochemistry

D-Index
46
Citations
7372
World Ranking
18960
National Ranking
1478

Overview

Sander Granneman is affiliated with the University of Edinburgh in the United Kingdom. Their research primarily resides within the domain of Biochemistry, Genetics, and Molecular Biology, with a particular focus on Molecular Biology, Genetics, Cancer Research, Ecology, and Infectious Diseases.

The main topics covered in their scientific investigations include:

  • RNA and protein synthesis mechanisms
  • RNA modifications and cancer
  • RNA Research and Splicing
  • Bacterial Genetics and Biotechnology
  • Genomics and Phylogenetic Studies
  • RNA regulation and disease
  • Cancer-related molecular mechanisms research

Granneman has collaborated frequently with several researchers, including:

  • Ira Alexandra Iosub
  • Stuart W. McKellar
  • Liang-Cui Chu
  • Irina Kalita
  • Lorna McLaren

Their work appears consistently in multiple publication venues, notably:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Nature Communications
  • eLife
  • Zenodo (CERN European Organization for Nuclear Research)
  • Nucleic Acids Research

Some of the recent papers authored or co-authored by Granneman include:

  • Hfq CLASH uncovers sRNA-target interaction networks linked to nutrient availability adaptation, 2020, eLife
  • RNase III CLASH in MRSA uncovers sRNA regulatory networks coupling metabolism to toxin expression, 2022, Nature Communications
  • RNase III-CLASH of multi-drug resistant Staphylococcus aureus reveals a regulatory mRNA 3'UTR required for intermediate vancomycin resistance, 2022, Nature Communications
  • The role of RNA-binding proteins in mediating adaptive responses in Gram-positive bacteria, 2021, FEBS Journal
  • The RNA-bound proteome of MRSA reveals post-transcriptional roles for helix-turn-helix DNA-binding and Rossmann-fold proteins, 2022, Nature Communications

Best Publications

  • Identification of protein binding sites on U3 snoRNA and pre-rRNA by UV cross-linking and high-throughput analysis of cDNAs

    Sander Granneman;Grzegorz Kudla;Elisabeth Petfalski;David Tollervey

  • Cross-linking, ligation, and sequencing of hybrids reveals RNA–RNA interactions in yeast

    Grzegorz Kudla;Sander Granneman;Daniela Hahn;Jean D. Beggs

  • The apoptosis-promoting factor TIA-1 is a regulator of alternative pre-mRNA splicing.

    Patrik Förch;Oscar Puig;Nancy Kedersha;Concepción Martínez

  • Ribosome biogenesis: of knobs and RNA processing.

    Sander Granneman;Susan J Baserga

  • RNA polymerase I transcription and pre-rRNA processing are linked by specific SSU processome components.

    Jennifer E.G. Gallagher;David A. Dunbar;Sander Granneman;Brianna M. Mitchell

  • Identification of bacteriophage-encoded anti-sRNAs in pathogenic Escherichia coli.

    Jai J. Tree;Sander Granneman;Sean P. McAteer;David Tollervey

  • A cluster of ribosome synthesis factors regulate pre-rRNA folding and 5.8S rRNA maturation by the Rat1 exonuclease

    Sander Granneman;Elisabeth Petfalski;David Tollervey

  • The nuclear RNA polymerase II surveillance system targets polymerase III transcripts: Targets for nuclear surveillance

    Wiebke Wlotzka;Grzegorz Kudla;Sander Granneman;David Tollervey

  • The Small-Subunit Processome Is a Ribosome Assembly Intermediate

    Kara A. Bernstein;Jennifer E. G. Gallagher;Brianna M. Mitchell;Sander Granneman

  • Proofreading of pre-40S ribosome maturation by a translation initiation factor and 60S subunits

    Simon Lebaron;Claudia Schneider;Claudia Schneider;Robert W van Nues;Agata Swiatkowska;Agata Swiatkowska

  • Prp43 bound at different sites on the pre-rRNA performs distinct functions in ribosome synthesis.

    Markus T. Bohnsack;Markus T. Bohnsack;Roman Martin;Sander Granneman;Maike Ruprecht

  • PAR-CLIP data indicate that Nrd1-Nab3-dependent transcription termination regulates expression of hundreds of protein coding genes in yeast

    Shaun Webb;Ralph D Hector;Grzegorz Kudla;Sander Granneman

  • The nuclear RNA polymerase II surveillance system targets polymerase III transcripts

    Wiebke Wlotzka;Grzegorz Kudla;Sander Granneman;David Tollervey

  • Purification of cross-linked RNA-protein complexes by phenol-toluol extraction.

    Erika C. Urdaneta;Carlos H. Vieira-Vieira;Timon Hick;Hans-Herrmann Wessels;Hans-Herrmann Wessels

  • Coupled GTPase and remodelling ATPase activities form a checkpoint for ribosome export

    Yoshitaka Matsuo;Sander Granneman;Matthias Thoms;Rizos Georgios Manikas

  • RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination

    Nila Roy Choudhury;Gregory Heikel;Maryia Trubitsyna;Peter Kubik

  • Cracking pre-40S ribosomal subunit structure by systematic analyses of RNA-protein cross-linking

    Sander Granneman;Elisabeth Petfalski;Agata Swiatkowska;David Tollervey

  • Crosstalk in gene expression: coupling and co-regulation of rDNA transcription, pre-ribosome assembly and pre-rRNA processing.

    Sander Granneman;Susan J Baserga

  • The PINc domain protein Utp24, a putative nuclease, is required for the early cleavage steps in 18S rRNA maturation

    Franziska Bleichert;Sander Granneman;Yvonne N. Osheim;Ann L. Beyer

  • The Putative NTPase Fap7 Mediates Cytoplasmic 20S Pre-rRNA Processing through a Direct Interaction with Rps14

    Sander Granneman;Madhusudan R. Nandineni;Susan J. Baserga

Frequent Co-Authors

David Tollervey
David Tollervey University of Edinburgh
Susan J. Baserga
Susan J. Baserga Yale University
José R. Penadés
José R. Penadés Imperial College London
Guido Sanguinetti
Guido Sanguinetti International School for Advanced Studies
Juri Rappsilber
Juri Rappsilber Technical University of Berlin
David L. Gally
David L. Gally University of Edinburgh
Ger J. M. Pruijn
Ger J. M. Pruijn Radboud University
J. Ross Fitzgerald
J. Ross Fitzgerald University of Edinburgh
Ed Hurt
Ed Hurt Heidelberg University
Uwe Ohler
Uwe Ohler Max Delbrück Center for Molecular Medicine

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