D-Index & Metrics Best Publications

D-Index & Metrics D-index (Discipline H-index) only includes papers and citation values for an examined discipline in contrast to General H-index which accounts for publications across all disciplines.

Discipline name D-index D-index (Discipline H-index) only includes papers and citation values for an examined discipline in contrast to General H-index which accounts for publications across all disciplines. Citations Publications World Ranking National Ranking
Biology and Biochemistry D-index 43 Citations 9,673 106 World Ranking 14302 National Ranking 6030

Overview

What is he best known for?

The fields of study he is best known for:

  • Gene
  • DNA
  • Cancer

His primary scientific interests are in Gene expression profiling, Gene expression, Computational biology, Genetics and Toxicogenomics. His Gene expression profiling research is multidisciplinary, relying on both Gene chip analysis, Microarray analysis techniques, Signal transduction and Data mining. To a larger extent, he studies Gene with the aim of understanding Gene expression.

In general Gene, his work in Genomics is often linked to Enzyme inducer linking many areas of study. His Computational biology research integrates issues from False positive paradox, Linear model, Statistics and Statistical power. In general Genetics study, his work on RNA-Seq, Transcriptome and Proteomics often relates to the realm of Data selection, thereby connecting several areas of interest.

His most cited work include:

  • Assessing Gene Significance from cDNA Microarray Expression Data via Mixed Models (1058 citations)
  • The Microarray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models (648 citations)
  • A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium (640 citations)

What are the main themes of his work throughout his whole career to date?

Gene expression, Gene, Gene expression profiling, Computational biology and Genetics are his primary areas of study. His research in Gene expression intersects with topics in Inflammation, Molecular biology and Signal transduction. His Gene expression profiling research includes elements of Phenotype, Microarray analysis techniques, DNA microarray and Data mining.

His studies deal with areas such as Classifier, Gene signature, RNA-Seq and Proteomics as well as DNA microarray. His research on Computational biology frequently links to adjacent areas such as Toxicogenomics. He works mostly in the field of Microarray, limiting it down to topics relating to Bioinformatics and, in certain cases, Toxicity and Acetaminophen.

He most often published in these fields:

  • Gene expression (36.69%)
  • Gene (30.94%)
  • Gene expression profiling (31.65%)

What were the highlights of his more recent work (between 2017-2021)?

  • Computational biology (21.58%)
  • Gene expression (36.69%)
  • Transcriptome (11.51%)

In recent papers he was focusing on the following fields of study:

The scientist’s investigation covers issues in Computational biology, Gene expression, Transcriptome, Gene and DNA methylation. The study incorporates disciplines such as RNA-Seq, Target enrichment, Genomics, Variant allele and Toxicogenomics in addition to Computational biology. Pierre R. Bushel is interested in DNA microarray, which is a field of Gene expression.

His Transcriptome research includes themes of Cellular differentiation, Drug and Gene expression profiling. His studies in Gene expression profiling integrate themes in fields like Biological pathway and Genetic variation. The various areas that Pierre R. Bushel examines in his Gene study include Normalization and Rand index, Cluster analysis.

Between 2017 and 2021, his most popular works were:

  • A hybrid gene selection approach to create the S1500+ targeted gene sets for use in high-throughput transcriptomics. (41 citations)
  • Mitochondrial nicotinamide adenine dinucleotide reduced (NADH) oxidation links the tricarboxylic acid (TCA) cycle with methionine metabolism and nuclear DNA methylation. (36 citations)
  • Revealing a human p53 universe. (31 citations)

In his most recent research, the most cited papers focused on:

  • Gene
  • DNA
  • Cancer

Pierre R. Bushel mostly deals with Methylation, DNA methylation, Gene, Computational biology and Epigenetics. His Methylation study improves the overall literature in Genetics. His Gene study is mostly concerned with Gene expression, P53 binding, Genetic variation, Gene expression profiling and Biological pathway.

His primary area of study in Gene expression is in the field of Cistrome. Pierre R. Bushel combines subjects such as DNA microarray, Transcriptome, Toxicogenomics and Drug with his study of Computational biology. His Epigenetics study combines topics in areas such as Mitochondrion and Mitochondrial DNA.

This overview was generated by a machine learning system which analysed the scientist’s body of work. If you have any feedback, you can contact us here.

Best Publications

Assessing Gene Significance from cDNA Microarray Expression Data via Mixed Models

Russell D. Wolfinger;Greg Gibson;Elizabeth D. Wolfinger;Lee Bennett.
Journal of Computational Biology (2001)

1370 Citations

The Microarray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models

Leming Shi;Gregory Campbell;Wendell D. Jones;Fabien Campagne.
Nature Biotechnology (2010)

1090 Citations

A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium

Zhenqiang Su;Paweł P. Łabaj;Sheng Li;Jean Thierry-Mieg.
Nature Biotechnology (2014)

755 Citations

Standardizing global gene expression analysis between laboratories and across platforms

Theodore Bammler;Richard P. Beyer;Sanchita Bhattacharya;Gary A. Boorman.
Nature Methods (2005)

591 Citations

Gene expression analysis reveals chemical-specific profiles.

Hisham K. Hamadeh;Pierre R. Bushel;Supriya Jayadev;Karla Martin.
Toxicological Sciences (2002)

518 Citations

The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance

Charles Wang;Binsheng Gong;Pierre R. Bushel;Jean Thierry-Mieg.
Nature Biotechnology (2014)

366 Citations

Prediction of compound signature using high density gene expression profiling.

Hisham K. Hamadeh;Pierre R. Bushel;Supriya Jayadev;Olimpia DiSorbo.
Toxicological Sciences (2002)

323 Citations

A comparison of batch effect removal methods for enhancement of prediction performance using MAQC-II microarray gene expression data

J. Luo;M. Schumacher;A. Scherer;D. Sanoudou.
Pharmacogenomics Journal (2010)

268 Citations

STATISTICAL ANALYSIS OF A GENE EXPRESSION MICROARRAY EXPERIMENT WITH REPLICATION

M. Kathleen Kerr;Cynthia A. Afshari;Lee Bennett;Pierre Bushel.
(2002)

261 Citations

Systems toxicology and the Chemical Effects in Biological Systems (CEBS) knowledge base.

Michael Waters;Gary Boorman;Pierre Bushel;Michael Cunningham.
Environmental Health Perspectives (2002)

211 Citations

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