Leming Shi

Research.com Recognitions

• 2023 - Research.com Biology and Biochemistry in China Leader Award

Overview

Best Publications

• The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

  Leming Shi;Laura H. Reid;Wendell D. Jones;Richard Shippy

  2470
  Citations

• The Microarray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models

  Leming Shi;Gregory Campbell;Wendell D. Jones;Fabien Campagne

  1213
  Citations

• A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium

  Zhenqiang Su;Paweł P. Łabaj;Sheng Li;Jean Thierry-Mieg

  1015
  Citations

• The Estrogen Receptor Relative Binding Affinities of 188 Natural and Xenochemicals: Structural Diversity of Ligands

  Robert M. Blair;Hong Fang;William S. Branham;Bruce S. Hass

  964
  Citations

• Evaluation of DNA microarray results with quantitative gene expression platforms.

  Roger D Canales;Yuling Luo;James C Willey;Bradley Austermiller

  772
  Citations

• Genomic and Transcriptomic Landscape of Triple-Negative Breast Cancers: Subtypes and Treatment Strategies.

  Yi Zhou Jiang;Ding Ma;Chen Suo;Jinxiu Shi

  738
  Citations

• Performance comparison of one-color and two-color platforms within the Microarray Quality Control (MAQC) project

  Tucker A Patterson;Edward K Lobenhofer;Stephanie B Fulmer-Smentek;Patrick J Collins

  601
  Citations

• Structure-activity relationships for a large diverse set of natural, synthetic, and environmental estrogens.

  Hong Fang;Weida Tong;Leming M. Shi;Robert Blair

  599
  Citations

• Telomerase activation by genomic rearrangements in high-risk neuroblastoma

  Martin Peifer;Falk Hertwig;Frederik Roels;Daniel Dreidax

  581
  Citations

• The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance

  Charles Wang;Binsheng Gong;Pierre R. Bushel;Jean Thierry-Mieg

  570
  Citations

• Rat toxicogenomic study reveals analytical consistency across microarray platforms

  Lei Guo;Edward K Lobenhofer;Charles Wang;Richard Shippy

  497
  Citations

• Drug hypersensitivity caused by alteration of the MHC-presented self-peptide repertoire

  David A. Ostrov;Barry J. Grant;Yuri A. Pompeu;John Sidney

  481
  Citations

• Comparison of RNA-seq and microarray-based models for clinical endpoint prediction.

  Wenqian Zhang;Ying Yu;Falk Hertwig;Falk Hertwig;Jean Thierry-Mieg

  437
  Citations

• QSAR models using a large diverse set of estrogens

  Leming M. Shi;Hong Fang;Weida Tong;Jie Wu

  437
  Citations

• Detecting and correcting systematic variation in large-scale RNA sequencing data

  Sheng Li;Paweł P Łabaj;Paul Zumbo;Peter Sykacek

  427
  Citations

• The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies

  Leming Shi;Wendell D. Jones;Roderick V. Jensen;Stephen C. Harris

  398
  Citations

• The External RNA Controls Consortium: a progress report.

  Shawn C Baker;Steven R Bauer;Richard P Beyer;James D Brenton

  398
  Citations

• Next-generation sequencing in the clinic: promises and challenges.

  Jiekun Xuan;Ying Yu;Tao Qing;Lei Guo

  392
  Citations

• A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages.

  Ying Yu;James C. Fuscoe;Chen Zhao;Chao Guo

  371
  Citations

• Similarities and Differences in the Expression of Drug-Metabolizing Enzymes between Human Hepatic Cell Lines and Primary Human Hepatocytes

  Lei Guo;Stacey Dial;Leming Shi;William Branham

  361
  Citations