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Engineering and Technology

D-Index
63
Citations
13664
World Ranking
1784
National Ranking
36

Overview

Julio R. Banga is affiliated with the Spanish National Research Council in Spain. Their research primarily spans Biochemistry, Genetics, and Molecular Biology, with significant contributions in the subfields of Molecular Biology, Artificial Intelligence, Genetics, Biophysics, and Computer Networks and Communications.

Their scholarly work addresses several main research topics, including:

  • Gene Regulatory Network Analysis
  • Microbial Metabolic Engineering and Bioproduction
  • Protein Structure and Dynamics
  • Metaheuristic Optimization Algorithms Research
  • Evolution and Genetic Dynamics
  • Bioinformatics and Genomic Networks
  • Biofuel Production and Bioconversion

Frequent coauthors collaborating with Julio R. Banga include Alejandro F. Villaverde, Irene Otero-Muras, Gemma Massonis, David R. Penas, and Jan Hasenauer.

Their research has been published in various venues, most notably:

  • bioRxiv (Cold Spring Harbor Laboratory) with 8 publications
  • PLoS Computational Biology with 6 publications
  • IEEE/ACM Transactions on Computational Biology and Bioinformatics with 2 publications
  • International Journal of Robust and Nonlinear Control with 2 publications
  • ACS Synthetic Biology with 2 publications

Some recent papers authored or coauthored by Julio R. Banga include:

  • "A protocol for dynamic model calibration," 2021, Investigio repository of University of Vigo (University of Vigo)
  • "PEtab-Interoperable specification of parameter estimation problems in systems biology," 2021, PLoS Computational Biology
  • "Assessment of Prediction Uncertainty Quantification Methods in Systems Biology," 2022, IEEE/ACM Transactions on Computational Biology and Bioinformatics
  • "An efficient ant colony optimization framework for HPC environments," 2021, Applied Soft Computing
  • "AutoRepar: A method to obtain identifiable and observable reparameterizations of dynamic models with mechanistic insights," 2021, International Journal of Robust and Nonlinear Control

Julio R. Banga has also contributed to book publications, including a 2024 title titled "Closing the Gap: Trends in Adaptation Finance for Fragile and Conflict-affected Settings," published by Washington, DC: World Bank eBooks.

Best Publications

  • Parameter Estimation in Biochemical Pathways: A Comparison of Global Optimization Methods

    Carmen G. Moles;Pedro Mendes;Julio R. Banga

  • Structural Identifiability of Systems Biology Models: A Critical Comparison of Methods

    Oana-Teodora Chis;Julio R. Banga;Eva Balsa-Canto

  • A hybrid approach for efficient and robust parameter estimation in biochemical pathways.

    Maria Rodriguez-Fernandez;Pedro Mendes;Julio R. Banga

  • Novel metaheuristic for parameter estimation in nonlinear dynamic biological systems

    Maria Rodriguez-Fernandez;Jose A Egea;Julio R Banga

  • Parameter estimation in large-scale systems biology models: a parallel and self-adaptive cooperative strategy

    David R. Penas;Patricia González;Jose A. Egea;Ramón Doallo

  • Optimization in computational systems biology

    Julio R Banga

  • Extended ant colony optimization for non-convex mixed integer nonlinear programming

    Martin Schlüter;Jose A. Egea;Julio R. Banga

  • Reverse engineering and identification in systems biology: strategies, perspectives and challenges

    Alejandro F. Villaverde;Julio R. Banga

  • Dynamic optimization of bioprocesses: efficient and robust numerical strategies.

    Julio R. Banga;Eva Balsa-Canto;Carmen G. Moles;Antonio A. Alonso

  • An iterative identification procedure for dynamic modeling of biochemical networks

    Eva Balsa-Canto;Antonio A Alonso;Julio R Banga

  • Improving food processing using modern optimization methods

    Julio R Banga;Eva Balsa-Canto;Carmen G Moles;Antonio A Alonso

  • Scatter search for chemical and bio-process optimization

    Jose A. Egea;María Rodríguez-Fernández;Julio R. Banga;Rafael Martí

  • MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics

    Jose A. Egea;David Henriques;David Henriques;Thomas Cokelaer;Alejandro Fernández Villaverde

  • Robust and efficient parameter estimation in dynamic models of biological systems

    Attila Gábor;Julio R. Banga

  • Optimization of the Thermal Processing of Conduction-Heated Canned Foods: Study of Several Objective Functions

    J.R. Banga;R.I. Perez-Martin;J.M. Gallardo;J.J. Casares

  • Parameter estimation and optimal experimental design.

    Julio R. Banga;Eva Balsa-Canto

  • AMIGO2, a toolbox for dynamic modeling, optimization and control in systems biology

    Eva Balsa-Canto;David Henriques;Attila Gábor;Julio R. Banga

  • An evolutionary method for complex-process optimization

    Jose A. Egea;Rafael Martí;Julio R. Banga

  • Global Optimization of Chemical Processes using Stochastic Algorithms

    Julio R. Banga;Warren D. Seider

  • Dynamic Optimization of Nonlinear Processes with an Enhanced Scatter Search Method

    Jose A. Egea;Eva Balsa-Canto;María-Sonia G. García;Julio R. Banga

  • strategies, perspectives and challenges Reverse engineering and identification in systems biology:

    Alejandro F. Villaverde;Julio R. Banga

Frequent Co-Authors

Antonio A. Alonso
Antonio A. Alonso Spanish National Research Council
Julio Saez-Rodriguez
Julio Saez-Rodriguez Heidelberg University
José Manuel Gallardo
José Manuel Gallardo Spanish National Research Council
Pedro Mendes
Pedro Mendes University of Connecticut
Rafael Martí
Rafael Martí University of Valencia
Bart Nicolai
Bart Nicolai KU Leuven
Ioannis G. Kevrekidis
Ioannis G. Kevrekidis Johns Hopkins University
Santiago P. Aubourg
Santiago P. Aubourg Spanish National Research Council
Olaf Wolkenhauer
Olaf Wolkenhauer University of Rostock
John Ross
John Ross University of Tasmania

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