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Hera Vlamakis

D-Index & Metrics

Discipline name D-Index World Ranking Current World Ranking National Ranking Current National Ranking Publications Citations
Microbiology 75 1470 1329 642 554 141 34158

Hera Vlamakis publications per year

The chart shows the history of publications by Hera Vlamakis between 2001 and 2025, highlighting the no. of papers published in each year and offering an overview of the publication velocity of this scholar. Hera Vlamakis published across 25 years, from 2001 to 2025, averaging 6.1 papers a year. Output peaked at 23 publications in 2021. 6 of the 153 publications appeared in the last two years.

No. of publications
5 10 15 20
Bar chart. Horizontal axis: year, 2001 to 2025. Vertical axis: number of publications, 0 to 23. Peak 23 publications in 2021. 2001: 1 publication 2002: 0 publications 2003: 1 publication 2004: 2 publications 2005: 2 publications 2006: 0 publications 2007: 2 publications 2008: 2 publications 2009: 3 publications 2010: 1 publication 2011: 7 publications 2012: 4 publications 2013: 8 publications 2014: 3 publications 2015: 6 publications 2016: 10 publications 2017: 4 publications 2018: 12 publications 2019: 18 publications 2020: 16 publications 2021: 23 publications 2022: 18 publications 2023: 4 publications 2024: 3 publications 2025: 3 publications
2001 2025

153 publications in total across all disciplines

View publications per year as a table
Hera Vlamakis: publications per year, 2001 to 2025
Year Publications
2001 1
2002 0
2003 1
2004 2
2005 2
2006 0
2007 2
2008 2
2009 3
2010 1
2011 7
2012 4
2013 8
2014 3
2015 6
2016 10
2017 4
2018 12
2019 18
2020 16
2021 23
2022 18
2023 4
2024 3
2025 3
Total 153
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Hera Vlamakis publication distribution in Microbiology in 2026

The chart shows the distribution of publications by all Research.com ranked scientists in the field of Microbiology in 2026. The highlighted bar marks where Hera Vlamakis sits on this spectrum.

No. of scientists
50 100 150 200 250
Bar chart with 64 bars. Horizontal axis: publications, 55–64 to 679+. Vertical axis: number of scientists, 0 to 288. Most scientists, 288, have 135–144 publications. The last bar groups every scientist with 679 publications or more. The highlighted bar, 135–144 publications, is where this scientist sits. 55–64 publications: 8 scientists 65–74 publications: 29 scientists 75–84 publications: 55 scientists 85–94 publications: 112 scientists 95–104 publications: 137 scientists 105–114 publications: 190 scientists 115–124 publications: 235 scientists 125–134 publications: 234 scientists 135–144 publications: 288 scientists 145–154 publications: 265 scientists 155–164 publications: 264 scientists 165–174 publications: 253 scientists 175–184 publications: 276 scientists 185–194 publications: 190 scientists 195–204 publications: 234 scientists 205–214 publications: 208 scientists 215–224 publications: 198 scientists 225–234 publications: 155 scientists 235–244 publications: 161 scientists 245–254 publications: 160 scientists 255–264 publications: 146 scientists 265–274 publications: 139 scientists 275–284 publications: 148 scientists 285–294 publications: 115 scientists 295–304 publications: 96 scientists 305–314 publications: 88 scientists 315–324 publications: 106 scientists 325–334 publications: 65 scientists 335–344 publications: 76 scientists 345–354 publications: 64 scientists 355–364 publications: 62 scientists 365–374 publications: 65 scientists 375–384 publications: 61 scientists 385–394 publications: 34 scientists 395–404 publications: 44 scientists 405–414 publications: 36 scientists 415–424 publications: 35 scientists 425–434 publications: 29 scientists 435–444 publications: 33 scientists 445–454 publications: 34 scientists 455–464 publications: 25 scientists 465–474 publications: 26 scientists 475–484 publications: 20 scientists 485–494 publications: 19 scientists 495–504 publications: 16 scientists 505–514 publications: 17 scientists 515–524 publications: 23 scientists 525–534 publications: 14 scientists 535–544 publications: 14 scientists 545–554 publications: 18 scientists 555–564 publications: 12 scientists 565–574 publications: 7 scientists 575–584 publications: 9 scientists 585–594 publications: 9 scientists 595–604 publications: 9 scientists 605–614 publications: 7 scientists 615–624 publications: 9 scientists 625–634 publications: 7 scientists 635–644 publications: 4 scientists 645–654 publications: 5 scientists 655–664 publications: 6 scientists 665–674 publications: 7 scientists 675–678 publications: 3 scientists 679+ publications: 99 scientists
55–64 publications 679+

This scientist: 141 publications — 21st percentile

21% of scientists in this discipline score the same or lower.

The last bar groups every scientist with 679 publications or more.

View publications distribution as a table
Number of Microbiology scientists by publication count, Research.com 2026 ranking edition. Based on 5,513 ranked scientists.
Publications Scientists This scientist
55–64 8
65–74 29
75–84 55
85–94 112
95–104 137
105–114 190
115–124 235
125–134 234
135–144 288 141
145–154 265
155–164 264
165–174 253
175–184 276
185–194 190
195–204 234
205–214 208
215–224 198
225–234 155
235–244 161
245–254 160
255–264 146
265–274 139
275–284 148
285–294 115
295–304 96
305–314 88
315–324 106
325–334 65
335–344 76
345–354 64
355–364 62
365–374 65
375–384 61
385–394 34
395–404 44
405–414 36
415–424 35
425–434 29
435–444 33
445–454 34
455–464 25
465–474 26
475–484 20
485–494 19
495–504 16
505–514 17
515–524 23
525–534 14
535–544 14
545–554 18
555–564 12
565–574 7
575–584 9
585–594 9
595–604 9
605–614 7
615–624 9
625–634 7
635–644 4
645–654 5
655–664 6
665–674 7
675–678 3
679+ 99
Download as CSV

Hera Vlamakis D-index placement in Microbiology in 2026

The chart shows the D-index (discipline H-index) distribution of Microbiology scientists ranked by Research.com in 2026. The highlighted bar marks where Hera Vlamakis sits on this spectrum.

No. of scientists
50 100 150
Bar chart with 88 bars. Horizontal axis: D-Index, 40 to 127+. Vertical axis: number of scientists, 0 to 162. Most scientists, 162, have 58 D-Index. The last bar groups every scientist with 127 D-Index or more. The highlighted bar, 75 D-Index, is where this scientist sits. 40 D-Index: 30 scientists 41 D-Index: 86 scientists 42 D-Index: 90 scientists 43 D-Index: 117 scientists 44 D-Index: 122 scientists 45 D-Index: 123 scientists 46 D-Index: 108 scientists 47 D-Index: 110 scientists 48 D-Index: 106 scientists 49 D-Index: 109 scientists 50 D-Index: 129 scientists 51 D-Index: 111 scientists 52 D-Index: 116 scientists 53 D-Index: 127 scientists 54 D-Index: 134 scientists 55 D-Index: 134 scientists 56 D-Index: 112 scientists 57 D-Index: 136 scientists 58 D-Index: 162 scientists 59 D-Index: 151 scientists 60 D-Index: 139 scientists 61 D-Index: 123 scientists 62 D-Index: 126 scientists 63 D-Index: 144 scientists 64 D-Index: 109 scientists 65 D-Index: 103 scientists 66 D-Index: 124 scientists 67 D-Index: 112 scientists 68 D-Index: 103 scientists 69 D-Index: 131 scientists 70 D-Index: 94 scientists 71 D-Index: 93 scientists 72 D-Index: 96 scientists 73 D-Index: 92 scientists 74 D-Index: 80 scientists 75 D-Index: 66 scientists 76 D-Index: 87 scientists 77 D-Index: 60 scientists 78 D-Index: 73 scientists 79 D-Index: 59 scientists 80 D-Index: 57 scientists 81 D-Index: 55 scientists 82 D-Index: 47 scientists 83 D-Index: 77 scientists 84 D-Index: 50 scientists 85 D-Index: 45 scientists 86 D-Index: 42 scientists 87 D-Index: 41 scientists 88 D-Index: 32 scientists 89 D-Index: 38 scientists 90 D-Index: 35 scientists 91 D-Index: 34 scientists 92 D-Index: 27 scientists 93 D-Index: 26 scientists 94 D-Index: 33 scientists 95 D-Index: 22 scientists 96 D-Index: 37 scientists 97 D-Index: 22 scientists 98 D-Index: 21 scientists 99 D-Index: 22 scientists 100 D-Index: 30 scientists 101 D-Index: 16 scientists 102 D-Index: 20 scientists 103 D-Index: 17 scientists 104 D-Index: 19 scientists 105 D-Index: 16 scientists 106 D-Index: 19 scientists 107 D-Index: 18 scientists 108 D-Index: 14 scientists 109 D-Index: 10 scientists 110 D-Index: 9 scientists 111 D-Index: 7 scientists 112 D-Index: 11 scientists 113 D-Index: 6 scientists 114 D-Index: 15 scientists 115 D-Index: 10 scientists 116 D-Index: 12 scientists 117 D-Index: 7 scientists 118 D-Index: 10 scientists 119 D-Index: 10 scientists 120 D-Index: 11 scientists 121 D-Index: 2 scientists 122 D-Index: 7 scientists 123 D-Index: 12 scientists 124 D-Index: 5 scientists 125 D-Index: 9 scientists 126 D-Index: 6 scientists 127+ D-Index: 95 scientists
40 D-Index 127+

This scientist: 75 D-Index — 73rd percentile

73% of scientists in this discipline score the same or lower.

The last bar groups every scientist with 127 D-Index or more.

View D-Index distribution as a table
Number of Microbiology scientists by D-index, Research.com 2026 ranking edition. Based on 5,513 ranked scientists.
D-Index Scientists This scientist
40 30
41 86
42 90
43 117
44 122
45 123
46 108
47 110
48 106
49 109
50 129
51 111
52 116
53 127
54 134
55 134
56 112
57 136
58 162
59 151
60 139
61 123
62 126
63 144
64 109
65 103
66 124
67 112
68 103
69 131
70 94
71 93
72 96
73 92
74 80
75 66 75
76 87
77 60
78 73
79 59
80 57
81 55
82 47
83 77
84 50
85 45
86 42
87 41
88 32
89 38
90 35
91 34
92 27
93 26
94 33
95 22
96 37
97 22
98 21
99 22
100 30
101 16
102 20
103 17
104 19
105 16
106 19
107 18
108 14
109 10
110 9
111 7
112 11
113 6
114 15
115 10
116 12
117 7
118 10
119 10
120 11
121 2
122 7
123 12
124 5
125 9
126 6
127+ 95
Download as CSV

Overview

Hera Vlamakis is affiliated with the Broad Institute in the United States. Their research spans multiple areas within biochemistry, genetics, and molecular biology, with significant contributions to medicine as well. The scientist's work focuses predominantly on molecular biology, immunology, food science, genetics, and epidemiology as subfields.

Their main research topics include:

  • Gut microbiota and health
  • Probiotics and fermented foods
  • Metabolomics and mass spectrometry studies
  • Inflammatory bowel disease
  • Clostridium difficile and Clostridium perfringens research
  • Immune cell function and interaction
  • Microscopic colitis

Hera Vlamakis has published extensively in notable scientific venues. The most frequent publication venues include:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Nature
  • Nature Communications
  • Cell Host & Microbe
  • Cell

Their recent peer-reviewed papers feature the following:

  • "Structure-based protein function prediction using graph convolutional networks," 2021, Nature Communications
  • "Novel bile acid biosynthetic pathways are enriched in the microbiome of centenarians," 2021, Nature
  • "Global chemical effects of the microbiome include new bile-acid conjugations," 2020, Nature
  • "Human gut bacteria produce ΤΗ17-modulating bile acid metabolites," 2022, Nature
  • "Akkermansia muciniphila phospholipid induces homeostatic immune responses," 2022, Nature

Collaboration has been a notable aspect of Hera Vlamakis's career, with frequent co-authors including:

  • Ramnik J. Xavier (52 joint publications)
  • Damian R. Plichta (19 joint publications)
  • Clary B. Clish (13 joint publications)
  • Curtis Huttenhower (12 joint publications)
  • Julián Ávila-Pacheco (11 joint publications)

Overall, Vlamakis's research activity demonstrates a strong interdisciplinary approach combining genetics, molecular biology, and immunology alongside advanced techniques in metabolomics. Their work contributes to the understanding of gut microbiota's role in health and disease, focusing on microbial metabolites, immune interactions, and probiotic research.

Best Publications

  • Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases.

    Jason Lloyd-Price;Jason Lloyd-Price;Cesar Arze;Ashwin N. Ananthakrishnan;Melanie Schirmer;Melanie Schirmer

  • Gut microbiome structure and metabolic activity in inflammatory bowel disease

    Eric A Franzosa;Eric A Franzosa;Alexandra Sirota-Madi;Julian Avila-Pacheco;Nadine Fornelos

  • Variation in Microbiome LPS Immunogenicity Contributes to Autoimmunity in Humans

    Tommi Vatanen;Tommi Vatanen;Aleksandar D. Kostic;Aleksandar D. Kostic;Eva D'Hennezel;Heli Siljander

  • Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome.

    Pamela Ferretti;Edoardo Pasolli;Adrian Tett;Francesco Asnicar

  • Linking the Human Gut Microbiome to Inflammatory Cytokine Production Capacity.

    Melanie Schirmer;Melanie Schirmer;Sanne P. Smeekens;Hera Vlamakis;Martin Jaeger

  • Sticking together: building a biofilm the Bacillus subtilis way

    Hera Vlamakis;Yunrong Chai;Yunrong Chai;Pascale Beauregard;Richard Losick

  • A defined commensal consortium elicits CD8 T cells and anti-cancer immunity

    Takeshi Tanoue;Satoru Morita;Damian R. Plichta;Ashwin N. Skelly

  • Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability

    Moran Yassour;Moran Yassour;Tommi Vatanen;Tommi Vatanen;Heli Siljander;Anu-Maaria Hämäläinen

  • Microbial genes and pathways in inflammatory bowel disease.

    Melanie Schirmer;Ashley Garner;Hera Vlamakis;Hera Vlamakis;Ramnik J. Xavier;Ramnik J. Xavier

  • The human gut microbiome in early-onset type 1 diabetes from the TEDDY study

    Tommi Vatanen;Eric A. Franzosa;Eric A. Franzosa;Randall Schwager;Surya Tripathi

  • Indoleacrylic Acid Produced by Commensal Peptostreptococcus Species Suppresses Inflammation

    Marta Wlodarska;Chengwei Luo;Raivo Kolde;Eva d’Hennezel

  • Structure-based protein function prediction using graph convolutional networks.

    Vladimir Gligorijević;P. Douglas Renfrew;Tomasz Kosciolek;Tomasz Kosciolek;Julia Koehler Leman

  • Ruminococcus gnavus , a member of the human gut microbiome associated with Crohn's disease, produces an inflammatory polysaccharide.

    Matthew T. Henke;Douglas J. Kenny;Chelsi D. Cassilly;Hera Vlamakis

  • A novel Ruminococcus gnavus clade enriched in inflammatory bowel disease patients

    Andrew Brantley Hall;Andrew Brantley Hall;Moran Yassour;Moran Yassour;Jenny Sauk;Jenny Sauk;Ashley Garner;Ashley Garner

  • Evidence for extensive resistance gene transfer among Bacteroides spp. and among Bacteroides and other genera in the human colon.

    N. B. Shoemaker;H. Vlamakis;K. Hayes;A. A. Salyers

  • Bacillus subtilis biofilm induction by plant polysaccharides

    Pascale B. Beauregard;Yunrong Chai;Hera Vlamakis;Richard Losick

  • Control of cell fate by the formation of an architecturally complex bacterial community

    Hera Vlamakis;Claudio Aguilar;Richard Losick;Roberto Kolter

  • Human gut bacteria produce ΤΗ17-modulating bile acid metabolites

    Unknown

  • Novel bile acid biosynthetic pathways are enriched in the microbiome of centenarians

    Yuko Sato;Koji Atarashi;Damian R. Plichta;Yasumichi Arai

  • Dynamics of metatranscription in the inflammatory bowel disease gut microbiome

    Melanie Schirmer;Melanie Schirmer;Eric A. Franzosa;Eric A. Franzosa;Jason Lloyd-Price;Jason Lloyd-Price;Lauren J. McIver;Lauren J. McIver

  • Generation of multiple cell types in Bacillus subtilis

    Daniel Lopez;Hera Vlamakis;Roberto Kolter

  • Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability

    Moran Yassour;Tommi Vatanen;Heli Siljander;Anu-Maaria Hämäläinen

Frequent Co-Authors

Ramnik J. Xavier
Ramnik J. Xavier Broad Institute
Curtis Huttenhower
Curtis Huttenhower Harvard University
Eric A. Franzosa
Eric A. Franzosa Harvard University
Roberto Kolter
Roberto Kolter Harvard University
Eric S. Lander
Eric S. Lander Broad Institute
Jorma Ilonen
Jorma Ilonen University of Turku
Suvi M. Virtanen
Suvi M. Virtanen Tampere University
Richard Losick
Richard Losick Harvard University
Ashwin N. Ananthakrishnan
Ashwin N. Ananthakrishnan Harvard University
Mikael Knip
Mikael Knip University of Helsinki

External Links

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Related Online Degrees & Career Pathways

Pursuing a degree in Microbiology opens doors to various healthcare and research fields. For those facing challenges in traditional admissions, many online colleges that accept felons provide valuable opportunities to advance education and careers without barriers.

Students interested in integrating microbiology with patient care may consider becoming a functional medicine nurse practitioner, a role focusing on holistic health and personalized treatments. This pathway leverages knowledge of microbes in understanding complex health conditions.

Alternatively, careers in health information are gaining popularity. Earning certification as a CPC (Certified Professional Coder) allows specialists to manage medical coding with precision, crucial in microbiology-related healthcare settings.

Further advancement can be achieved by pursuing a master in health information management salary, linking microbiological data with healthcare administration. This degree supports leadership roles that optimize patient data handling and improve healthcare outcomes.

Best Scientists Citing Hera Vlamakis

Mihai G. Netea

Mihai G. Netea

Radboud University

Publications: 67

Ákos T. Kovács

Ákos T. Kovács

Leiden University

Publications: 61

Curtis Huttenhower

Curtis Huttenhower

Harvard University

Publications: 49

Cisca Wijmenga

Cisca Wijmenga

University Medical Center Groningen

Publications: 48

Roberto Kolter

Roberto Kolter

Harvard University

Publications: 39

Leo A. B. Joosten

Leo A. B. Joosten

Radboud University

Publications: 35

Ramnik J. Xavier

Ramnik J. Xavier

Broad Institute

Publications: 35

Richard Losick

Richard Losick

Harvard University

Publications: 32

Pieter C. Dorrestein

Pieter C. Dorrestein

University of California, San Diego

Publications: 31

Rob Knight

Rob Knight

University of California, San Diego

Publications: 31

Alexandra Zhernakova

Alexandra Zhernakova

University Medical Center Groningen

Publications: 30

Jingyuan Fu

Jingyuan Fu

University Medical Center Groningen

Publications: 27

Oscar P. Kuipers

Oscar P. Kuipers

University of Groningen

Publications: 25

Willem M. de Vos

Willem M. de Vos

Wageningen University & Research

Publications: 25

Catherine Stanton

Catherine Stanton

Teagasc - The Irish Agriculture and Food Development Authority

Publications: 24

Harry Sokol

Harry Sokol

Sorbonne University

Publications: 24

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