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Microbiology

D-Index
75
Citations
34158
World Ranking
1470
National Ranking
642

Overview

Hera Vlamakis is affiliated with the Broad Institute in the United States. Their research spans multiple areas within biochemistry, genetics, and molecular biology, with significant contributions to medicine as well. The scientist's work focuses predominantly on molecular biology, immunology, food science, genetics, and epidemiology as subfields.

Their main research topics include:

  • Gut microbiota and health
  • Probiotics and fermented foods
  • Metabolomics and mass spectrometry studies
  • Inflammatory bowel disease
  • Clostridium difficile and Clostridium perfringens research
  • Immune cell function and interaction
  • Microscopic colitis

Hera Vlamakis has published extensively in notable scientific venues. The most frequent publication venues include:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Nature
  • Nature Communications
  • Cell Host & Microbe
  • Cell

Their recent peer-reviewed papers feature the following:

  • "Structure-based protein function prediction using graph convolutional networks," 2021, Nature Communications
  • "Novel bile acid biosynthetic pathways are enriched in the microbiome of centenarians," 2021, Nature
  • "Global chemical effects of the microbiome include new bile-acid conjugations," 2020, Nature
  • "Human gut bacteria produce ΤΗ17-modulating bile acid metabolites," 2022, Nature
  • "Akkermansia muciniphila phospholipid induces homeostatic immune responses," 2022, Nature

Collaboration has been a notable aspect of Hera Vlamakis's career, with frequent co-authors including:

  • Ramnik J. Xavier (52 joint publications)
  • Damian R. Plichta (19 joint publications)
  • Clary B. Clish (13 joint publications)
  • Curtis Huttenhower (12 joint publications)
  • Julián Ávila-Pacheco (11 joint publications)

Overall, Vlamakis's research activity demonstrates a strong interdisciplinary approach combining genetics, molecular biology, and immunology alongside advanced techniques in metabolomics. Their work contributes to the understanding of gut microbiota's role in health and disease, focusing on microbial metabolites, immune interactions, and probiotic research.

Best Publications

  • Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases.

    Jason Lloyd-Price;Jason Lloyd-Price;Cesar Arze;Ashwin N. Ananthakrishnan;Melanie Schirmer;Melanie Schirmer

  • Gut microbiome structure and metabolic activity in inflammatory bowel disease

    Eric A Franzosa;Eric A Franzosa;Alexandra Sirota-Madi;Julian Avila-Pacheco;Nadine Fornelos

  • Variation in Microbiome LPS Immunogenicity Contributes to Autoimmunity in Humans

    Tommi Vatanen;Tommi Vatanen;Aleksandar D. Kostic;Aleksandar D. Kostic;Eva D'Hennezel;Heli Siljander

  • Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome.

    Pamela Ferretti;Edoardo Pasolli;Adrian Tett;Francesco Asnicar

  • Linking the Human Gut Microbiome to Inflammatory Cytokine Production Capacity.

    Melanie Schirmer;Melanie Schirmer;Sanne P. Smeekens;Hera Vlamakis;Martin Jaeger

  • Sticking together: building a biofilm the Bacillus subtilis way

    Hera Vlamakis;Yunrong Chai;Yunrong Chai;Pascale Beauregard;Richard Losick

  • A defined commensal consortium elicits CD8 T cells and anti-cancer immunity

    Takeshi Tanoue;Satoru Morita;Damian R. Plichta;Ashwin N. Skelly

  • Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability

    Moran Yassour;Moran Yassour;Tommi Vatanen;Tommi Vatanen;Heli Siljander;Anu-Maaria Hämäläinen

  • Microbial genes and pathways in inflammatory bowel disease.

    Melanie Schirmer;Ashley Garner;Hera Vlamakis;Hera Vlamakis;Ramnik J. Xavier;Ramnik J. Xavier

  • The human gut microbiome in early-onset type 1 diabetes from the TEDDY study

    Tommi Vatanen;Eric A. Franzosa;Eric A. Franzosa;Randall Schwager;Surya Tripathi

  • Indoleacrylic Acid Produced by Commensal Peptostreptococcus Species Suppresses Inflammation

    Marta Wlodarska;Chengwei Luo;Raivo Kolde;Eva d’Hennezel

  • Structure-based protein function prediction using graph convolutional networks.

    Vladimir Gligorijević;P. Douglas Renfrew;Tomasz Kosciolek;Tomasz Kosciolek;Julia Koehler Leman

  • Ruminococcus gnavus , a member of the human gut microbiome associated with Crohn's disease, produces an inflammatory polysaccharide.

    Matthew T. Henke;Douglas J. Kenny;Chelsi D. Cassilly;Hera Vlamakis

  • A novel Ruminococcus gnavus clade enriched in inflammatory bowel disease patients

    Andrew Brantley Hall;Andrew Brantley Hall;Moran Yassour;Moran Yassour;Jenny Sauk;Jenny Sauk;Ashley Garner;Ashley Garner

  • Evidence for extensive resistance gene transfer among Bacteroides spp. and among Bacteroides and other genera in the human colon.

    N. B. Shoemaker;H. Vlamakis;K. Hayes;A. A. Salyers

  • Bacillus subtilis biofilm induction by plant polysaccharides

    Pascale B. Beauregard;Yunrong Chai;Hera Vlamakis;Richard Losick

  • Control of cell fate by the formation of an architecturally complex bacterial community

    Hera Vlamakis;Claudio Aguilar;Richard Losick;Roberto Kolter

  • Human gut bacteria produce ΤΗ17-modulating bile acid metabolites

    Unknown

  • Novel bile acid biosynthetic pathways are enriched in the microbiome of centenarians

    Yuko Sato;Koji Atarashi;Damian R. Plichta;Yasumichi Arai

  • Dynamics of metatranscription in the inflammatory bowel disease gut microbiome

    Melanie Schirmer;Melanie Schirmer;Eric A. Franzosa;Eric A. Franzosa;Jason Lloyd-Price;Jason Lloyd-Price;Lauren J. McIver;Lauren J. McIver

  • Generation of multiple cell types in Bacillus subtilis

    Daniel Lopez;Hera Vlamakis;Roberto Kolter

  • Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability

    Moran Yassour;Tommi Vatanen;Heli Siljander;Anu-Maaria Hämäläinen

Frequent Co-Authors

Ramnik J. Xavier
Ramnik J. Xavier Broad Institute
Curtis Huttenhower
Curtis Huttenhower Harvard University
Eric A. Franzosa
Eric A. Franzosa Harvard University
Roberto Kolter
Roberto Kolter Harvard University
Eric S. Lander
Eric S. Lander Broad Institute
Jorma Ilonen
Jorma Ilonen University of Turku
Suvi M. Virtanen
Suvi M. Virtanen Tampere University
Richard Losick
Richard Losick Harvard University
Ashwin N. Ananthakrishnan
Ashwin N. Ananthakrishnan Harvard University
Mikael Knip
Mikael Knip University of Helsinki

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Related Online Degrees & Career Pathways

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Further advancement can be achieved by pursuing a master in health information management salary, linking microbiological data with healthcare administration. This degree supports leadership roles that optimize patient data handling and improve healthcare outcomes.

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