Yong Zhang

Best Publications

• Model-based Analysis of ChIP-Seq (MACS)

  Yong Zhang;Tao Liu;Clifford A Meyer;Jérôme Eeckhoute

  16819
  Citations

• Identifying ChIP-seq enrichment using MACS

  Jianxing Feng;Tao Liu;Bo Qin;Yong Zhang

  1704
  Citations

• FoxA1 Translates Epigenetic Signatures into Enhancer-Driven Lineage-Specific Transcription

  Mathieu Lupien;Jérôme Eeckhoute;Clifford A. Meyer;Qianben Wang

  1114
  Citations

• Androgen receptor regulates a distinct transcription program in androgen-independent prostate cancer

  Qianben Wang;Wei Li;Yong Zhang;Xin Yuan

  1054
  Citations

• PPARγ and C/EBP factors orchestrate adipocyte biology via adjacent binding on a genome-wide scale

  Martina I. Lefterova;Yong Zhang;David J. Steger;Michael Schupp

  898
  Citations

• Cistrome: an integrative platform for transcriptional regulation studies.

  Tao Liu;Jorge A Ortiz;Len Taing;Clifford A Meyer

  759
  Citations

• Distinct features of H3K4me3 and H3K27me3 chromatin domains in pre-implantation embryos

  Xiaoyu Liu;Chenfei Wang;Wenqiang Liu;Jingyi Li

  629
  Citations

• Integrative genomic analyses reveal clinically relevant long noncoding RNAs in human cancer.

  Zhou Du;Teng Fei;Roel G W Verhaak;Zhen Su

  568
  Citations

• Nucleosome dynamics define transcriptional enhancers.

  Housheng Hansen He;Clifford A. Meyer;Hyunjin Shin;Shannon T. Bailey

  553
  Citations

• Target analysis by integration of transcriptome and ChIP-seq data with BETA

  Su Wang;Hanfei Sun;Jian Ma;Chongzhi Zang

  499
  Citations

• Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo

  Yong Zhang;Zarmik Moqtaderi;Barbara P Rattner;Ghia Euskirchen

  460
  Citations

• GFOLD: a generalized fold change for ranking differentially expressed genes from RNA-seq data

  Jianxing Feng;Clifford A. Meyer;Qian Wang;Jun S. Liu

  445
  Citations

• Chromatin signature of embryonic pluripotency is established during genome activation

  Nadine L. Vastenhouw;Yong Zhang;Yong Zhang;Ian G. Woods;Farhad Imam

  407
  Citations

• A Transcriptional Signature and Common Gene Networks Link Cancer with Lipid Metabolism and Diverse Human Diseases

  Heather A. Hirsch;Dimitrios Iliopoulos;Amita Joshi;Yong Zhang

  394
  Citations

• NONCODE: an integrated knowledge database of non-coding RNAs

  Changning Liu;Baoyan Bai;Geir Skogerbø;Lun Cai

  370
  Citations

• Reprogramming of H3K9me3-dependent heterochromatin during mammalian embryo development

  Chenfei Wang;Xiaoyu Liu;Yawei Gao;Lei Yang

  343
  Citations

• Engineered nanomedicine for myeloma and bone microenvironment targeting

  Archana Swami;Michaela R. Reagan;Pamela Antonia Basto;Yuji Mishima

  297
  Citations

• Using MACS to Identify Peaks from ChIP-Seq Data

  Jianxing Feng;Tao Liu;Yong Zhang

  274
  Citations

• Systematic evaluation of factors influencing ChIP-seq fidelity

  Yiwen Chen;Nicolas Negre;Nicolas Negre;Qunhua Li;Joanna O. Mieczkowska

  209
  Citations

• Identification of key factors conquering developmental arrest of somatic cell cloned embryos by combining embryo biopsy and single-cell sequencing.

  Wenqiang Liu;Xiaoyu Liu;Chenfei Wang;Yawei Gao

  193
  Citations