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Microbiology

D-Index
46
Citations
14012
World Ranking
4844
National Ranking
1867

Overview

Soo-Yon Rhee is affiliated with Stanford University in the United States. Their research primarily focuses on medicine, with significant contributions to immunology and microbiology. Within these fields, they have specialized in infectious diseases, virology, and epidemiology, alongside work involving computational theory, mathematics, and molecular biology.

The main topics covered in Soo-Yon Rhee's research include HIV/AIDS drug development and treatment, HIV research and treatment, and HIV/AIDS research and interventions. Additionally, their work touches on Pneumocystis jirovecii pneumonia detection and treatment, SARS-CoV-2 and COVID-19 research, COVID-19 clinical research studies, and computational drug discovery methods.

Frequent publication venues for their work include:

  • Viruses
  • AIDS Research and Human Retroviruses
  • AIDS Research and Therapy
  • Research Square (Research Square)
  • bioRxiv (Cold Spring Harbor Laboratory)

Recent papers authored or co-authored by Soo-Yon Rhee include:

  • "Coronavirus Antiviral Research Database (CoV-RDB): An Online Database Designed to Facilitate Comparisons between Candidate Anti-Coronavirus Compounds," 2020, Viruses
  • "HIV-1 transmitted drug resistance surveillance: shifting trends in study design and prevalence estimates," 2020, Journal of the International AIDS Society
  • "Treatment Emergent Dolutegravir Resistance Mutations in Individuals Naïve to HIV-1 Integrase Inhibitors: A Rapid Scoping Review," 2023, Viruses
  • "Prevalence of Emergent Dolutegravir Resistance Mutations in People Living with HIV: A Rapid Scoping Review," 2024, Viruses
  • "Adherence to contemporary antiretroviral treatment regimens and impact on immunological and virologic outcomes in a US healthcare system," 2022, PLoS ONE

Soo-Yon Rhee has collaborated frequently with several researchers across multiple studies. Notable co-authors include:

  • Robert W. Shafer
  • Philip L. Tzou
  • Kaiming Tao
  • Michael R. Jordan
  • Susan Holmes

The scope of Rhee's work covers both foundational and applied research in infectious diseases, particularly focused on HIV/AIDS. The intersections of their research with computational drug discovery and COVID-19 studies show a multidisciplinary approach incorporating emerging health challenges and biomedical technologies.

Best Publications

  • Drug Resistance Mutations for Surveillance of Transmitted HIV-1 Drug-Resistance: 2009 Update

    Diane E. Bennett;Ricardo J. Camacho;Dan Otelea;Daniel R. Kuritzkes

  • Human immunodeficiency virus reverse transcriptase and protease sequence database

    Robert W. Shafer;Derek Stevenson;Bryan Chan

  • HIV-1 protease and reverse transcriptase mutations for drug resistance surveillance.

    Robert W. Shafer;Soo-Yon Rhee;Deenan Pillay;Veronica Miller

  • Genotypic predictors of human immunodeficiency virus type 1 drug resistance

    Soo-Yon Rhee;Jonathan Taylor;Gauhar Wadhera;Asa Ben-Hur

  • Viral Population Estimation Using Pyrosequencing

    Nicholas Eriksson;Lior Pachter;Yumi Mitsuya;Soo-Yon Rhee

  • Global epidemiology of drug resistance after failure of WHO recommended first-line regimens for adult HIV-1 infection: a multicentre retrospective cohort study

    John Gregson;Michele Tang;Nicaise Ndembi;Raph L Hamers

  • Geographic and temporal trends in the molecular epidemiology and genetic mechanisms of transmitted HIV-1 drug resistance: an individual-patient- and sequence-level meta-analysis

    Soo Yon Rhee;Jose Luis Blanco;Michael R. Jordan;Jonathan Taylor

  • HIV-1 Integrase Inhibitor Resistance and Its Clinical Implications

    Jose-Luis Blanco;Vici Varghese;Soo-Yon Rhee;Jose M. Gatell

  • HIV-1 Protease Mutations and Protease Inhibitor Cross-Resistance

    Soo-Yon Rhee;Jonathan Taylor;W. Jeffrey Fessel;David Kaufman

  • The calibrated population resistance tool

    Robert J. Gifford;Tommy F. Liu;Soo-Yon Rhee;Mark Kiuchi

  • Super Learning: An Application to the Prediction of HIV-1 Drug Resistance *

    Sandra E. Sinisi;Eric C. Polley;Maya L. Petersen;Soo Yon Rhee

  • HIV-1 Protease and Reverse-Transcriptase Mutations: Correlations with Antiretroviral Therapy in Subtype B Isolates and Implications for Drug-Resistance Surveillance

    Soo-Yon Rhee;W. Jeffrey Fessel;Andrew R. Zolopa;Leo Hurley

  • HIV-1 subtype B protease and reverse transcriptase amino acid covariation.

    Soo-Yon Rhee;Tommy F Liu;Susan P Holmes;Robert W Shafer

  • Non-nucleoside reverse transcriptase inhibitor (NNRTI) cross-resistance: implications for preclinical evaluation of novel NNRTIs and clinical genotypic resistance testing

    George L. Melikian;Soo-Yon Rhee;Vici Varghese;Danielle Porter

  • Natural variation of HIV-1 group M integrase: Implications for a new class of antiretroviral inhibitors

    Soo-Yon Rhee;Tommy F Liu;Mark Kiuchi;Rafael Zioni

  • Distribution of Human Immunodeficiency Virus Type 1 Protease and Reverse Transcriptase Mutation Patterns in 4,183 Persons Undergoing Genotypic Resistance Testing

    Soo-Yon Rhee;Tommy Liu;Jaideep Ravela;Matthew J. Gonzales

  • Minority Variants Associated with Transmitted and Acquired HIV-1 Nonnucleoside Reverse Transcriptase Inhibitor Resistance: Implications for the Use of Second-Generation Nonnucleoside Reverse Transcriptase Inhibitors

    Vici Varghese;Rajin Shahriar;Soo Yon Rhee;Tommy Liu

  • A systematic review of the genetic mechanisms of dolutegravir resistance.

    Soo-Yon Rhee;Philip M Grant;Philip L Tzou;Geoffrey Barrow

  • Lack of detectable human immunodeficiency virus type 1 superinfection during 1072 person-years of observation.

    Matthew J. Gonzales;Eric Delwart;Soo-Yon Rhee;Rose Tsui

  • HIV-1 pol mutation frequency by subtype and treatment experience: extension of the HIVseq program to seven non-B subtypes

    Soo-Yon Rhee;Rami Kantor;David A Katzenstein;Ricardo Camacho

Frequent Co-Authors

Robert W. Shafer
Robert W. Shafer Stanford University
Susan Holmes
Susan Holmes Stanford University
Anne-Mieke Vandamme
Anne-Mieke Vandamme Rega Institute for Medical Research
Jonathan Taylor
Jonathan Taylor Stanford University
Tulio de Oliveira
Tulio de Oliveira University of KwaZulu-Natal
David Katzenstein
David Katzenstein Stanford University
Jonathan M. Schapiro
Jonathan M. Schapiro Sheba Medical Center
Rolf Kaiser
Rolf Kaiser University of Cologne
Lynn Morris
Lynn Morris University of the Witwatersrand
Deenan Pillay
Deenan Pillay University College London

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