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Niko Beerenwinkel

Niko Beerenwinkel

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Biology and Biochemistry
Switzerland
2023

D-Index & Metrics

Biology and Biochemistry

D-Index
75
Citations
24864
World Ranking
5241
National Ranking
102

Niko Beerenwinkel publication distribution in Biology and Biochemistry in 2026

The chart shows the distribution of publications by all Research.com ranked scientists in the field of Biology and Biochemistry in 2026. The highlighted bar marks where Niko Beerenwinkel sits on this spectrum.

47–56 publications: 8 scientists 57–66 publications: 35 scientists 67–76 publications: 106 scientists 77–86 publications: 231 scientists 87–96 publications: 414 scientists 97–106 publications: 546 scientists 107–116 publications: 704 scientists 117–126 publications: 849 scientists 127–136 publications: 980 scientists 137–146 publications: 942 scientists 147–156 publications: 969 scientists 157–166 publications: 950 scientists 167–176 publications: 951 scientists 177–186 publications: 915 scientists 187–196 publications: 787 scientists 197–206 publications: 841 scientists 207–216 publications: 735 scientists 217–226 publications: 709 scientists 227–236 publications: 651 scientists 237–246 publications: 605 scientists 247–256 publications: 510 scientists 257–266 publications: 524 scientists 267–276 publications: 434 scientists 277–286 publications: 418 scientists 287–296 publications: 350 scientists 297–306 publications: 363 scientists 307–316 publications: 315 scientists 317–326 publications: 296 scientists 327–336 publications: 261 scientists 337–346 publications: 240 scientists 347–356 publications: 219 scientists 357–366 publications: 197 scientists 367–376 publications: 154 scientists 377–386 publications: 161 scientists 387–396 publications: 155 scientists 397–406 publications: 145 scientists 407–416 publications: 124 scientists 417–426 publications: 112 scientists 427–436 publications: 132 scientists 437–446 publications: 116 scientists 447–456 publications: 99 scientists 457–466 publications: 81 scientists 467–476 publications: 91 scientists 477–486 publications: 80 scientists 487–496 publications: 80 scientists 497–506 publications: 60 scientists 507–516 publications: 36 scientists 517–526 publications: 46 scientists 527–536 publications: 54 scientists 537–546 publications: 44 scientists 547–556 publications: 43 scientists 557–566 publications: 43 scientists 567–576 publications: 42 scientists 577–586 publications: 25 scientists 587–596 publications: 34 scientists 597–606 publications: 23 scientists 607–616 publications: 33 scientists 617–626 publications: 31 scientists 627–636 publications: 27 scientists 637–646 publications: 25 scientists 647–656 publications: 28 scientists 657–666 publications: 34 scientists 667–676 publications: 18 scientists 677–686 publications: 16 scientists 687–696 publications: 10 scientists 697–706 publications: 12 scientists 707–716 publications: 21 scientists 717–726 publications: 12 scientists 727–736 publications: 12 scientists 737–746 publications: 10 scientists 747–756 publications: 7 scientists 757–766 publications: 13 scientists 767–776 publications: 15 scientists 777–786 publications: 13 scientists 787–796 publications: 9 scientists 797–806 publications: 9 scientists 807–816 publications: 7 scientists 817–826 publications: 4 scientists 827–836 publications: 9 scientists 837–846 publications: 7 scientists 847–856 publications: 3 scientists 857–866 publications: 5 scientists 867–876 publications: 5 scientists 877–886 publications: 11 scientists 887–896 publications: 3 scientists 897–906 publications: 4 scientists 907–916 publications: 7 scientists 917–926 publications: 5 scientists 927–936 publications: 6 scientists 937–946 publications: 6 scientists 947–956 publications: 3 scientists 957–966 publications: 7 scientists 967–976 publications: 2 scientists 977–986 publications: 2 scientists 987–996 publications: 1 scientists 997–1,006 publications: 5 scientists 1,007–1,016 publications: 2 scientists 1,017–1,026 publications: 2 scientists 1,027 publications: 1 scientists 1,028+ publications: 100 scientists
47 publications 1,028+

This scientist: 370 publications — 87th percentile

87% of scientists in this discipline score the same or lower.

The last bar groups every scientist with 1,028 publications or more.

Niko Beerenwinkel D-index placement in Biology and Biochemistry in 2026

The chart shows the D-index (discipline H-index) distribution of Biology and Biochemistry scientists ranked by Research.com in 2026. The highlighted bar marks where Niko Beerenwinkel sits on this spectrum.

40–41 D-Index: 80 scientists 42–43 D-Index: 183 scientists 44–45 D-Index: 317 scientists 46–47 D-Index: 504 scientists 48–49 D-Index: 718 scientists 50–51 D-Index: 900 scientists 52–53 D-Index: 1,026 scientists 54–55 D-Index: 1,150 scientists 56–57 D-Index: 1,236 scientists 58–59 D-Index: 1,253 scientists 60–61 D-Index: 1,163 scientists 62–63 D-Index: 1,131 scientists 64–65 D-Index: 1,032 scientists 66–67 D-Index: 897 scientists 68–69 D-Index: 814 scientists 70–71 D-Index: 715 scientists 72–73 D-Index: 709 scientists 74–75 D-Index: 596 scientists 76–77 D-Index: 512 scientists 78–79 D-Index: 473 scientists 80–81 D-Index: 412 scientists 82–83 D-Index: 373 scientists 84–85 D-Index: 358 scientists 86–87 D-Index: 285 scientists 88–89 D-Index: 273 scientists 90–91 D-Index: 227 scientists 92–93 D-Index: 208 scientists 94–95 D-Index: 193 scientists 96–97 D-Index: 153 scientists 98–99 D-Index: 157 scientists 100–101 D-Index: 148 scientists 102–103 D-Index: 120 scientists 104–105 D-Index: 113 scientists 106–107 D-Index: 100 scientists 108–109 D-Index: 86 scientists 110–111 D-Index: 67 scientists 112–113 D-Index: 72 scientists 114–115 D-Index: 73 scientists 116–117 D-Index: 64 scientists 118–119 D-Index: 53 scientists 120–121 D-Index: 60 scientists 122–123 D-Index: 54 scientists 124–125 D-Index: 43 scientists 126–127 D-Index: 38 scientists 128–129 D-Index: 49 scientists 130–131 D-Index: 26 scientists 132–133 D-Index: 18 scientists 134–135 D-Index: 23 scientists 136–137 D-Index: 32 scientists 138–139 D-Index: 32 scientists 140–141 D-Index: 27 scientists 142–143 D-Index: 19 scientists 144–145 D-Index: 22 scientists 146–147 D-Index: 12 scientists 148–149 D-Index: 16 scientists 150–151 D-Index: 14 scientists 152–153 D-Index: 10 scientists 154–155 D-Index: 13 scientists 156–157 D-Index: 10 scientists 158–159 D-Index: 7 scientists 160–161 D-Index: 9 scientists 162–163 D-Index: 13 scientists 164–165 D-Index: 4 scientists 166 D-Index: 4 scientists 167+ D-Index: 98 scientists
40 D-Index 167+

This scientist: 75 D-Index — 74th percentile

74% of scientists in this discipline score the same or lower.

The last bar groups every scientist with 167 D-Index or more.

Research.com Recognitions

  • 2023 - Research.com Biology and Biochemistry in Switzerland Leader Award

Overview

Niko Beerenwinkel is affiliated with ETH Zurich in Switzerland and specializes in research at the intersection of biochemistry, genetics, molecular biology, and medicine. Their academic contributions span key areas such as cancer genomics, single-cell transcriptomics, infectious diseases, and bioinformatics.

Their work encompasses various main fields of study including:

  • Biochemistry, Genetics and Molecular Biology
  • Medicine

Within these domains, they have contributed to several subfields like:

  • Molecular Biology
  • Cancer Research
  • Infectious Diseases
  • Genetics
  • Hematology

Niko Beerenwinkel's research addresses a number of prominent topics, specifically:

  • Cancer Genomics and Diagnostics
  • Single-cell and spatial transcriptomics
  • Gene expression and cancer classification
  • SARS-CoV-2 and COVID-19 Research
  • Bioinformatics and Genomic Networks
  • SARS-CoV-2 detection and testing
  • Evolution and Genetic Dynamics

Their recent publications include the following works:

  • Eleven grand challenges in single-cell data science, 2020, Genome biology
  • Clonal evolution of acute myeloid leukemia revealed by high-throughput single-cell genomics, 2020, Nature Communications
  • Genome-Scale CRISPR Screening in Human Intestinal Organoids Identifies Drivers of TGF-β Resistance, 2020, Cell stem cell
  • LifeTime and improving European healthcare through cell-based interceptive medicine, 2020, Nature
  • Early detection and surveillance of SARS-CoV-2 genomic variants in wastewater using COJAC, 2022, Nature Microbiology

The frequent co-authors who have collaborated with Beerenwinkel include:

  • Jack Kuipers
  • Katharina Jahn
  • Ivan Topolsky
  • Christian Beisel
  • Charlotte K.Y. Ng

Their publications have appeared repeatedly in select scientific venues, highlighting consistent contributions to the literature. Notable publication venues include:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Bioinformatics
  • Nature Communications
  • PLoS Computational Biology
  • arXiv (Cornell University)

Best Publications

  • ROCR: visualizing classifier performance in R

    Tobias Sing;Oliver Sander;Niko Beerenwinkel;Thomas Lengauer

  • Eleven grand challenges in single-cell data science

    David Lähnemann;David Lähnemann;Johannes Köster;Johannes Köster;Ewa Szczurek;Davis J. McCarthy;Davis J. McCarthy

  • Comparative lesion sequencing provides insights into tumor evolution

    Siân Jones;Wei Dong Chen;Wei Dong Chen;Giovanni Parmigiani;Frank Diehl

  • Neutrophils escort circulating tumour cells to enable cell cycle progression

    Barbara Maria Szczerba;Francesc Castro-Giner;Francesc Castro-Giner;Marcus Vetter;Ilona Krol

  • Genetic progression and the waiting time to cancer

    Niko Beerenwinkel;Tibor Antal;David Dingli;Arne Traulsen

  • Microbiome interactions shape host fitness.

    Alison L. Gould;Vivian Zhang;Lisa Lamberti;Lisa Lamberti;Eric W. Jones

  • From hype to reality: data science enabling personalized medicine

    Holger Fröhlich;Rudi Balling;Niko Beerenwinkel;Oliver Kohlbacher

  • Cancer Evolution: Mathematical Models and Computational Inference

    Niko Beerenwinkel;Niko Beerenwinkel;Roland F. Schwarz;Moritz Gerstung;Florian Markowetz

  • Geno2pheno: estimating phenotypic drug resistance from HIV-1 genotypes

    Niko Beerenwinkel;Martin Däumer;Mark Oette;Klaus Korn

  • The Common Gut Microbe Eubacterium hallii also Contributes to Intestinal Propionate Formation

    Christina Engels;Hans-Joachim Ruscheweyh;Hans-Joachim Ruscheweyh;Niko Beerenwinkel;Niko Beerenwinkel;Christophe Lacroix

  • ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data

    Osvaldo Zagordi;Osvaldo Zagordi;Arnab Bhattacharya;Nicholas Eriksson;Niko Beerenwinkel;Niko Beerenwinkel

  • Tree Inference for Single-Cell Data.

    Katharina Jahn;Jack Kuipers;Niko Beerenwinkel

  • Diversity and complexity of HIV-1 drug resistance: a bioinformatics approach to predicting phenotype from genotype

    Niko Beerenwinkel;Barbara Schmidt;Hauke Walter;Rolf Kaiser

  • Reliable detection of subclonal single-nucleotide variants in tumour cell populations

    Moritz Gerstung;Christian Beisel;Markus Rechsteiner;Peter Wild

  • Viral Population Estimation Using Pyrosequencing

    Nicholas Eriksson;Lior Pachter;Yumi Mitsuya;Soo-Yon Rhee

  • Clonal evolution of acute myeloid leukemia revealed by high-throughput single-cell genomics.

    Kiyomi Morita;Kiyomi Morita;Feng Wang;Katharina Jahn;Katharina Jahn;Tianyuan Hu

  • Challenges and opportunities in estimating viral genetic diversity from next-generation sequencing data

    Niko Beerenwinkel;Niko Beerenwinkel;Huldrych F. Günthard;Volker Roth;Karin J. Metzner

  • Error correction of next-generation sequencing data and reliable estimation of HIV quasispecies

    Osvaldo Zagordi;Rolf Klein;Martin Däumer;Niko Beerenwinkel

  • Predicting HIV coreceptor usage on the basis of genetic and clinical covariates

    To Bias Sing;Andrew J. Low;Niko Beerenwinkel;Oliver Sander

  • Ultra-deep sequencing for the analysis of viral populations

    Niko Beerenwinkel;Osvaldo Zagordi;Osvaldo Zagordi

Frequent Co-Authors

Thomas Lengauer
Thomas Lengauer Max Planck Institute for Informatics
Rolf Kaiser
Rolf Kaiser University of Cologne
Joachim Selbig
Joachim Selbig Max Planck Society
Moritz Gerstung
Moritz Gerstung German Cancer Research Center
Huldrych F. Günthard
Huldrych F. Günthard University of Zurich
Karin J. Metzner
Karin J. Metzner University of Zurich
Volker Roth
Volker Roth University of Basel
Holger Moch
Holger Moch University of Zurich
Matthias Cavassini
Matthias Cavassini University of Lausanne

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