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Benjamin J. Raphael

Benjamin J. Raphael

D-Index & Metrics

Genetics

D-Index
77
Citations
78487
World Ranking
1728
National Ranking
792

Overview

Benjamin J. Raphael is affiliated with Princeton University in the United States and has an extensive research portfolio primarily in the field of Biochemistry, Genetics, and Molecular Biology. Their work includes a significant focus on Molecular Biology, Cancer Research, Genetics, Pathology and Forensic Medicine, and Oncology.

The scientist has contributed extensively to several main topics within their field, including:

  • Cancer Genomics and Diagnostics
  • Single-cell and spatial transcriptomics
  • Gene expression and cancer classification
  • Bioinformatics and Genomic Networks
  • Genetic factors in colorectal cancer
  • Gene Regulatory Network Analysis
  • Molecular Biology Techniques and Applications

Benjamin J. Raphael has authored and co-authored numerous publications in notable scholarly venues. Their frequent journals and repositories include:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Nature Communications
  • Cancer Research
  • Bioinformatics
  • Zenodo (CERN European Organization for Nuclear Research)

Some of their recent papers are:

  • "Eleven grand challenges in single-cell data science", 2020, Genome Biology
  • "The evolutionary history of 2,658 cancers", 2020, Nature
  • "Analyses of non-coding somatic drivers in 2,658 cancer whole genomes", 2020, Nature
  • "Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes", 2021, Cell
  • "Spatial epigenome-transcriptome co-profiling of mammalian tissues", 2023, Nature

The scientist collaborates frequently with several co-authors, including:

  • Uthsav Chitra
  • Simone Zaccaria
  • Gad Getz
  • Palash Sashittal
  • Steven E. Schumacher

Best Publications

  • The cancer genome atlas pan-cancer analysis project

    John N Weinstein;John N Weinstein;Eric A. Collisson;Gordon B Mills;Kenna R Mills Shaw;Kenna R Mills Shaw

  • Integrated genomic analyses of ovarian carcinoma

    D. Bell;A. Berchuck;M. Birrer;J. Chien

  • Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia

    Timothy J. Ley;Christopher Miller;Li Ding;Benjamin J. Raphael

  • Comprehensive molecular characterization of gastric adenocarcinoma

    Adam J. Bass;Vesteinn Thorsson;Ilya Shmulevich;Sheila M. Reynolds

  • Mutational landscape and significance across 12 major cancer types

    Cyriac Kandoth;Michael D. McLellan;Fabio Vandin;Kai Ye

  • Comprehensivemolecular characterization of clear cell renal cell carcinoma

    Chad J. Creighton;Margaret Morgan;Preethi H. Gunaratne;Preethi H. Gunaratne;David A. Wheeler

  • Pan-cancer analysis of whole genomes

    Peter J. Campbell;Gad Getz;Jan O. Korbel;Joshua M. Stuart

  • Integrated Genomic Characterization of Papillary Thyroid Carcinoma

    Nishant Agrawal;Rehan Akbani;B. Arman Aksoy;Adrian Ally

  • The mutational landscape of lethal castration-resistant prostate cancer

    Catherine S. Grasso;Yi Mi Wu;Dan R. Robinson;Xuhong Cao

  • International network of cancer genome projects

    Thomas J. Hudson;Thomas J. Hudson;Warwick Anderson;Axel Aretz;Anna D. Barker

  • Integrated Genomic Characterization of Pancreatic Ductal Adenocarcinoma

    Benjamin J. Raphael;Ralph H. Hruban;Andrew J. Aguirre;Richard A. Moffitt

  • Multiplatform analysis of 12 cancer types reveals molecular classification within and across tissues of origin

    Katherine A. Hoadley;Christina Yau;Denise M. Wolf;Andrew D. Cherniack

  • Eleven grand challenges in single-cell data science

    David Lähnemann;David Lähnemann;Johannes Köster;Johannes Köster;Ewa Szczurek;Davis J. McCarthy;Davis J. McCarthy

  • Comprehensive Molecular Characterization of Papillary Renal-Cell Carcinoma.

    W. Marston Linehan;Paul T. Spellman;Christopher J. Ricketts;Chad J. Creighton

  • The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families.

    Shibu Yooseph;Granger Sutton;Douglas B. Rusch;Aaron L Halpern

  • The evolutionary history of 2,658 cancers

    Moritz Gerstung;Moritz Gerstung;Clemency Jolly;Ignaty Leshchiner;Stefan C Dentro;Stefan C Dentro;Stefan C Dentro

  • Patterns of somatic structural variation in human cancer genomes

    Yilong Li;Nicola D Roberts;Jeremiah A Wala;Jeremiah A Wala;Ofer Shapira;Ofer Shapira

  • Pan-cancer network analysis identifies combinations of rare somatic mutations across pathways and protein complexes

    Mark D.M. Leiserson;Fabio Vandin;Hsin Ta Wu;Jason R. Dobson

  • The Cancer Genome Atlas Pan-Cancer analysis project

    Kyle Chang;Chad J Creighton;Caleb Davis;Lawrence Donehower

  • Integrated genomic analyses of ovarian carcinoma

    D. Bell;A. Berchuck;M. Birrer;J. Chien

Frequent Co-Authors

Gad Getz
Gad Getz Broad Institute
Li Ding
Li Ding Washington University in St. Louis
Andrew D. Cherniack
Andrew D. Cherniack Broad Institute
Rameen Beroukhim
Rameen Beroukhim Harvard University
Matthew Meyerson
Matthew Meyerson Harvard University
David A. Wheeler
David A. Wheeler Baylor College of Medicine
Gordon B. Mills
Gordon B. Mills Oregon Health & Science University
Michael S. Lawrence
Michael S. Lawrence Harvard University
Peter W. Laird
Peter W. Laird Van Andel Institute
John N. Weinstein
John N. Weinstein The University of Texas MD Anderson Cancer Center

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