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Biology and Biochemistry

D-Index
76
Citations
21880
World Ranking
5021
National Ranking
2411

Overview

Shohei Koide is affiliated with New York University in the United States. Their research spans the fields of Medicine and Biochemistry, Genetics and Molecular Biology, with a focus on several specialized subfields including Molecular Biology, Oncology, Radiology, Nuclear Medicine and Imaging, Infectious Diseases, and Immunology.

Their main topics of research include:

  • Monoclonal and Polyclonal Antibodies Research
  • CAR-T cell therapy research
  • SARS-CoV-2 and COVID-19 Research
  • COVID-19 Clinical Research Studies
  • Glycosylation and Glycoproteins Research
  • Protein Kinase Regulation and GTPase Signaling
  • Receptor Mechanisms and Signaling

Koide has contributed numerous papers to various scientific journals. Some notable recent publications include:

  • "SHP2 inhibition diminishes KRASG12C cycling and promotes tumor microenvironment remodeling" (2020), The Journal of Experimental Medicine
  • "Microbial signatures in the lower airways of mechanically ventilated COVID-19 patients associated with poor clinical outcome" (2021), Nature Microbiology
  • "Conformational interconversion of MLKL and disengagement from RIPK3 precede cell death by necroptosis" (2021), Nature Communications
  • "Identification of MLKL membrane translocation as a checkpoint in necroptotic cell death using Monobodies" (2020), Proceedings of the National Academy of Sciences
  • "Two Distinct Structures of Membrane-Associated Homodimers of GTP- and GDP-Bound KRAS4B Revealed by Paramagnetic Relaxation Enhancement" (2020), Angewandte Chemie International Edition

Frequent collaborators in Koide's publications include:

  • Akiko Koide
  • Takamitsu Hattori
  • Kai Wen Teng
  • John P. O'Bryan
  • Alexis D. Corrado

Their work appears regularly in prominent scientific venues such as:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Nature Communications
  • Proceedings of the National Academy of Sciences
  • Cancer Research
  • Journal of Molecular Biology

Best Publications

  • Molecular mechanism of Thioflavin-T binding to amyloid fibrils.

    Matthew Biancalana;Shohei Koide

  • The fibronectin type III domain as a scaffold for novel binding proteins

    Akiko Koide;Charles W Bailey;Xiaolin Huang;Shohei Koide

  • Visualization of arrestin recruitment by a G-protein-coupled receptor

    Arun K. Shukla;Gerwin H. Westfield;Kunhong Xiao;Rosana I. Reis

  • Structure of active β-arrestin-1 bound to a G-protein-coupled receptor phosphopeptide

    Arun K. Shukla;Aashish Manglik;Andrew C Kruse;Kunhong Xiao

  • High-throughput generation of synthetic antibodies from highly functional minimalist phage-displayed libraries.

    Frederic A. Fellouse;Kaori Esaki;Sara Birtalan;Demetrios Raptis

  • Molecular Mechanism of Thioflavin-T Binding to the Surface of β-Rich Peptide Self-Assemblies

    Matthew Biancalana;Koki Makabe;Akiko Koide;Shohei Koide

  • Teaching an old scaffold new tricks: monobodies constructed using alternative surfaces of the FN3 scaffold.

    Akiko Koide;John Wojcik;Ryan N. Gilbreth;Robert J. Hoey

  • High-affinity single-domain binding proteins with a binary-code interface

    Akiko Koide;Ryan N. Gilbreth;Kaori Esaki;Valentina Tereshko

  • Crystal structure of full-length KcsA in its closed conformation

    Serdar Uysal;Valeria Vásquez;Valentina Tereshko;Kaori Esaki

  • Inhibition of RAS function through targeting an allosteric regulatory site

    Russell Spencer-Smith;Akiko Koide;Yong Zhou;Raphael R Eguchi

  • The importance of being tyrosine: lessons in molecular recognition from minimalist synthetic binding proteins.

    Shohei Koide;Sachdev S. Sidhu

  • ADP ribosylation of rat liver nucleosomal core histones.

    L O Burzio;P T Riquelme;S S Koide

  • Monobodies: antibody mimics based on the scaffold of the fibronectin type III domain.

    Akiko Koide;Shohei Koide

  • CDR-H3 Diversity Is Not Required for Antigen Recognition by Synthetic Antibodies.

    Helena Persson;Wei Ye;Amy Wernimont;Jarrett J. Adams

  • Evidence for adenosine diphosphate ribosylation of Ca2+, Mg2+-dependent endonuclease.

    Koichiro Yoshihara;Yoshinori Tanigawa;L. Burzio;S. S. Koide

  • ADP ribosylation of rat liver lysine-rich histone in vitro.

    P T Riquelme;L O Burzio;S S Koide

  • A functional role of polyADPR in DNA synthesis.

    Luis Burzio;S.S. Koide

  • Helix, sheet, and polyproline II frequencies and strong nearest neighbor effects in a restricted coil library.

    Abhishek K. Jha;Andres Colubri;Muhammad H. Zaman;Shohei Koide

  • Probing protein conformational changes in living cells by using designer binding proteins: Application to the estrogen receptor

    Akiko Koide;Stacy Abbatiello;Lisa Rothgery;Shohei Koide

  • Engineering of recombinant crystallization chaperones.

    Shohei Koide

Frequent Co-Authors

Akiko Koide
Akiko Koide New York University
Anthony A. Kossiakoff
Anthony A. Kossiakoff University of Chicago
Sachdev S. Sidhu
Sachdev S. Sidhu University of Waterloo
Valentina Tereshko
Valentina Tereshko University of Chicago
Marsha Rich Rosner
Marsha Rich Rosner University of Chicago
Joseph A. Piccirilli
Joseph A. Piccirilli University of Chicago
Christopher Miller
Christopher Miller Brandeis University
Tony Pawson
Tony Pawson University of Toronto
Eduardo Perozo
Eduardo Perozo University of Chicago
Benjamin J. Luft
Benjamin J. Luft Stony Brook University

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