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D-Index & Metrics

Biology and Biochemistry

D-Index
57
Citations
57587
World Ranking
13487
National Ranking
5721

Overview

Shibu Yooseph is affiliated with the University of Central Florida in the United States and has produced a range of research primarily in the fields of Biochemistry, Genetics and Molecular Biology, and Medicine. Their work spans several related subfields, including Molecular Biology, Ecology, Materials Chemistry, Epidemiology, and Infectious Diseases.

Their recent publication efforts focus on topics such as gut microbiota and health, respiratory viral infections, probiotics and fermented foods, bacteriophages and microbial interactions, nosocomial infections in intensive care units, genomics and phylogenetic studies, and advanced nanomaterials in catalysis.

Notable recent papers by Shibu Yooseph include:

  • Bacterial associations in the healthy human gut microbiome across populations, 2021, Scientific Reports
  • Bacterial community structure alterations within the colorectal cancer gut microbiome, 2021, BMC Microbiology
  • Metatranscriptomics to characterize respiratory virome, microbiome, and host response directly from clinical samples, 2021, Cell Reports Methods
  • A neoteric antibacterial ceria-silver nanozyme for abiotic surfaces, 2024, Biomaterials
  • Identification of Nasal Gammaproteobacteria with Potent Activity against Staphylococcus aureus: Novel Insights into the "Noncarrier" State, 2021, mSphere

Their collaborative network includes frequent co-authors such as Seesandra V. Rajagopala, Meghan H. Shilts, Suman R. Das, Christian Rosas-Salazar, and Helen H. Boone.

Shibu Yooseph has published multiple papers in several recurring venues, including:

  • Scientific Reports
  • American Journal of Critical Care
  • bioRxiv (Cold Spring Harbor Laboratory)
  • Critical Care Medicine
  • Research Square (Research Square)

Best Publications

  • The Sequence of the Human Genome

    J. Craig Venter;Mark D. Adams;Eugene W. Myers;Peter W. Li

  • Structure, function and diversity of the healthy human microbiome

    Curtis Huttenhower;Curtis Huttenhower;Dirk Gevers;Rob Knight;Rob Knight;Sahar Abubucker

  • A framework for human microbiome research

    Barbara A. Methé;Karen E. Nelson;Mihai Pop;Heather H. Creasy

  • Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

    Robert M. Bowers;Nikos C. Kyrpides;Ramunas Stepanauskas;Miranda Harmon-Smith

  • The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific

    Douglas B. Rusch;Aaron L Halpern;Granger Sutton;Karla B. Heidelberg;Karla B. Heidelberg

  • Exploring Expression Data: Identification and Analysis of Coexpressed Genes

    Laurie J. Heyer;Semyon Kruglyak;Shibu Yooseph

  • Essential genes of a minimal bacterium

    John I. Glass;Nacyra Assad-Garcia;Nina Alperovich;Shibu Yooseph

  • The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families.

    Shibu Yooseph;Granger Sutton;Douglas B. Rusch;Aaron L Halpern

  • Gut Microbiome-Based Metagenomic Signature for Non-invasive Detection of Advanced Fibrosis in Human Nonalcoholic Fatty Liver Disease

    Rohit Loomba;Victor Seguritan;Weizhong Li;Tao Long

  • Diet and Feeding Pattern Affect the Diurnal Dynamics of the Gut Microbiome

    Amir Zarrinpar;Amir Zarrinpar;Amandine Chaix;Shibu Yooseph;Satchidananda Panda

  • Cultivation of a human-associated TM7 phylotype reveals a reduced genome and epibiotic parasitic lifestyle

    Xuesong He;Jeffrey S. McLean;Jeffrey S. McLean;Anna Edlund;Shibu Yooseph

  • Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage

    Chris L. Dupont;Douglas B. Rusch;Shibu Yooseph;Mary-Jane Lombardo

  • A Comparison of Whole-Genome Shotgun-Derived Mouse Chromosome 16 and the Human Genome

    Richard J. Mural;Mark D. Adams;Eugene W. Myers;Hamilton O. Smith

  • The Sorcerer II Global Ocean Sampling Expedition: Metagenomic Characterization of Viruses within Aquatic Microbial Samples

    Shannon J. Williamson;Douglas B. Rusch;Shibu Yooseph;Aaron L Halpern

  • Evaluation of 16s rDNA-based community profiling for human microbiome research

    Doyle V. Ward;Dirk Gevers;Georgia Giannoukos;Ashlee M. Earl

  • Analyses of the Microbial Diversity across the Human Microbiome

    Kelvin Li;Monika Bihan;Shibu Yooseph;Barbara A. Methé

  • Genomic and functional adaptation in surface ocean planktonic prokaryotes

    Shibu Yooseph;Kenneth H. Nealson;Douglas B. Rusch;John P. McCrow

  • Whole-genome shotgun assembly and comparison of human genome assemblies

    Sorin Istrail;Granger G. Sutton;Liliana Florea;Aaron L. Halpern

  • Functional Tradeoffs Underpin Salinity-Driven Divergence in Microbial Community Composition

    Chris L. Dupont;John Larsson;Shibu Yooseph;Karolina Ininbergs

  • Library preparation methodology can influence genomic and functional predictions in human microbiome research

    Marcus B. Jones;Sarah K. Highlander;Ericka L. Anderson;Weizhong Li

Frequent Co-Authors

Karen E. Nelson
Karen E. Nelson J. Craig Venter Institute
J. Craig Venter
J. Craig Venter J. Craig Venter Institute
Granger G. Sutton
Granger G. Sutton J. Craig Venter Institute
Manolito Torralba
Manolito Torralba J. Craig Venter Institute
Christopher L. Dupont
Christopher L. Dupont J. Craig Venter Institute
Daniel H. Huson
Daniel H. Huson University of Tübingen
Tandy Warnow
Tandy Warnow University of Illinois at Urbana-Champaign
Kenneth H. Nealson
Kenneth H. Nealson University of Southern California
Vineet Bafna
Vineet Bafna University of California, San Diego
Jonathan A. Eisen
Jonathan A. Eisen University of California, Davis

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