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Genetics

D-Index
69
Citations
17971
World Ranking
2345
National Ranking
1059

Overview

Ramana V. Davuluri is affiliated with Stony Brook University in the United States. Their research primarily spans the field of Biochemistry, Genetics, and Molecular Biology, with a significant focus on Molecular Biology, Cancer Research, Oncology, Immunology, and Pulmonary and Respiratory Medicine as subfields.

The scientist's work involves several key research topics, including:

  • RNA modifications and cancer
  • RNA and protein synthesis mechanisms
  • Genomics and phylogenetic studies
  • Machine learning in bioinformatics
  • Cancer-related molecular mechanisms research
  • RNA research and splicing
  • Ferroptosis and cancer prognosis

Ramana V. Davuluri has published in a variety of research venues. The most frequent publication outlets include:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Bioinformatics
  • Cancer Research
  • Scientific Reports
  • Neuro-Oncology

Some recent notable publications illustrate the scientist's research focus and contributions:

  • DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome, 2021, Bioinformatics
  • A first-in-human phase 0 clinical study of RNA interference-based spherical nucleic acids in patients with recurrent glioblastoma, 2021, Science Translational Medicine
  • FTO-Dependent N6-Methyladenosine Modifications Inhibit Ovarian Cancer Stem Cell Self-Renewal by Blocking cAMP Signaling, 2020, Cancer Research
  • Frizzled-7 Identifies Platinum-Tolerant Ovarian Cancer Cells Susceptible to Ferroptosis, 2020, Cancer Research
  • DNABERT-2: Efficient Foundation Model and Benchmark For Multi-Species Genome, 2023, arXiv (Cornell University)

The scientist collaborates frequently with other authors. The most frequent coauthors include:

  • Yanrong Ji
  • Daniela Matei
  • Pratik Dutta
  • Horacio Cárdenas
  • Edward J. Tanner

Best Publications

  • A MicroRNA Signature of Hypoxia

    Ritu Kulshreshtha;Manuela Ferracin;Sylwia E. Wojcik;Ramiro Garzon

  • CCAT2, a novel noncoding RNA mapping to 8q24, underlies metastatic progression and chromosomal instability in colon cancer

    Hui Ling;Riccardo Spizzo;Yaser Atlasi;Milena Nicoloso

  • DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

    Yanrong Ji;Zhihan Zhou;Han Liu;Ramana V Davuluri

  • Computational identification of promoters and first exons in the human genome.

    Ramana V. Davuluri;Ivo Grosse;Michael Q. Zhang

  • Direct coupling of the cell cycle and cell death machinery by E2F.

    Zaher Nahle;Zaher Nahle;Julia Polakoff;Ramana V. Davuluri;Ramana V. Davuluri;Mila E. McCurrach

  • AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.

    Ramana V Davuluri;Hao Sun;Saranyan K Palaniswamy;Nicole Matthews

  • The functional consequences of alternative promoter use in mammalian genomes

    Ramana V. Davuluri;Ramana V. Davuluri;Yutaka Suzuki;Sumio Sugano;Christoph Plass;Christoph Plass

  • Single-nucleotide polymorphisms inside microRNA target sites influence tumor susceptibility.

    Milena S. Nicoloso;Hao Sun;Hao Sun;Riccardo Spizzo;Hyunsoo Kim

  • PML Is a Direct p53 Target that Modulates p53 Effector Functions

    Elisa de Stanchina;Emmanuelle Querido;Masako Narita;Ramana V Davuluri

  • Association of a microRNA/TP53 Feedback Circuitry With Pathogenesis and Outcome of B-cell Chronic Lymphocytic Leukemia

    Muller Fabbri;Arianna Bottoni;Masayoshi Shimizu;Riccardo Spizzo

  • ADAR1 Forms a Complex with Dicer to Promote MicroRNA Processing and RNA-Induced Gene Silencing

    Hiromitsu Ota;Masayuki Sakurai;Ravi Gupta;Louis Valente

  • AGRIS and AtRegNet. A Platform to Link cis-Regulatory Elements and Transcription Factors into Regulatory Networks

    Saranyan K. Palaniswamy;Stephen James;Hao Sun;Rebecca S. Lamb

  • A microRNA component of the hypoxic response

    R. Kulshreshtha;R. V. Davuluri;G. A. Calin;Mircea Ivan

  • Pro- and Antiinflammatory Cytokine Signaling: Reciprocal Antagonism Regulates Interferon-gamma Production by Human Natural Killer Cells

    Jianhua Yu;Min Wei;Brian Becknell;Rossana Trotta

  • Imaging patterns predict patient survival and molecular subtype in glioblastoma via machine learning techniques.

    Luke Macyszyn;Hamed Akbari;Jared M. Pisapia;Xiao Da

  • MiR-145 participates with TP53 in a death-promoting regulatory loop and targets estrogen receptor-α in human breast cancer cells

    R. Spizzo;M. S. Nicoloso;L. Lupini;Y. Lu

  • The polymorphism rs944289 predisposes to papillary thyroid carcinoma through a large intergenic noncoding RNA gene of tumor suppressor type

    Jaroslaw Jendrzejewski;Huiling He;Hanna S. Radomska;Wei Li

  • Role of cancer-associated stromal fibroblasts in metastatic colon cancer to the liver and their expression profiles.

    Hidewaki Nakagawa;Sandya Liyanarachchi;Ramana V Davuluri;Herbert Auer

  • NF-κB Regulation of YY1 Inhibits Skeletal Myogenesis through Transcriptional Silencing of Myofibrillar Genes

    Huating Wang;Erin Hertlein;Nadine Bakkar;Hao Sun

  • CART Classification of Human 5′ UTR Sequences

    Ramana V. Davuluri;Yutaka Suzuki;Sumio Sugano;Michael Q. Zhang

Frequent Co-Authors

Sandya Liyanarachchi
Sandya Liyanarachchi The Ohio State University
Tim H M Huang
Tim H M Huang The University of Texas Health Science Center at San Antonio
Hao Sun
Hao Sun Chinese University of Hong Kong
George A. Calin
George A. Calin The University of Texas MD Anderson Cancer Center
Kenneth P. Nephew
Kenneth P. Nephew Indiana University
Christoph Plass
Christoph Plass German Cancer Research Center
Pearlly S. Yan
Pearlly S. Yan The Ohio State University
Victor X. Jin
Victor X. Jin Medical College of Wisconsin
Massimo Negrini
Massimo Negrini University of Ferrara
Louise C. Showe
Louise C. Showe The Wistar Institute

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