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Engineering and Technology

D-Index
41
Citations
34439
World Ranking
6773
National Ranking
100

Overview

Pascale Gaudet is affiliated with the Swiss Institute of Bioinformatics in Switzerland. Their research focuses primarily on the field of Biochemistry, Genetics and Molecular Biology, with significant contributions in Molecular Biology. They also engage in research related to Artificial Intelligence, Spectroscopy, Computational Theory and Mathematics, and Genetics.

The scientist's work spans several key topics including Bioinformatics and Genomic Networks, Biomedical Text Mining and Ontologies, Gene expression and cancer classification, Genomics and Phylogenetic Studies, Gene Regulatory Network Analysis, Genetics, Bioinformatics, and Biomedical Research, as well as Semantic Web and Ontologies.

Recent publications by Pascale Gaudet include the following papers:

  • UniProt: the Universal Protein Knowledgebase in 2023 (2022, Nucleic Acids Research)
  • The Gene Ontology knowledgebase in 2023 (2023, Genetics)
  • UniProt: the Universal Protein Knowledgebase in 2025 (2024, Nucleic Acids Research)
  • Annotation of biologically relevant ligands in UniProtKB using ChEBI (2022, Bioinformatics)
  • DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation (2021, Nucleic Acids Research)

Frequent co-authors of Pascale Gaudet include:

  • Ruth C. Lovering
  • Marc Feuermann
  • Chris Mungall
  • María Martin
  • Sandra Orchard

Pascale Gaudet often publishes in the following venues:

  • Nucleic Acids Research
  • Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms
  • Bioinformatics
  • Journal of Biomedical Semantics
  • bioRxiv (Cold Spring Harbor Laboratory)

Best Publications

  • The Gene Ontology Resource: 20 years and still GOing strong

    S. Carbon;E. Douglass;N. Dunn;B. Good

  • The Gene Ontology (GO) database and informatics resource.

    Harris Ma;Clark J;Ireland A;Lomax J

  • The Gene Ontology resource: enriching a GOld mine

    Seth Carbon;Eric Douglass;Benjamin M Good

  • The Gene Ontology knowledgebase in 2023

    Unknown

  • SynGO : An Evidence-Based, Expert-Curated Knowledge Base for the Synapse

    Frank Koopmans;Pim van Nierop;Maria Andres-Alonso;Andrea Byrnes

  • Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

    Pascale Gaudet;Michael S. Livstone;Suzanna E. Lewis;Paul D. Thomas

  • Gene ontology annotations and resources

    Blake Ja;Dolan M;Drabkin H

  • PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium

    Huaiyu Mi;Qing Dong;Anushya Muruganujan;Pascale Gaudet

  • The Gene Ontology project in 2008

    Midori A Harris;Jennifer I. Deegan;Amelia Ireland;Jane Lomax

  • The Gene Ontology in 2010: Extensions and refinements

    Tanya Z. Berardini;Varsha K. Khodiyar;Ruth C. Lovering;Philippa Talmud

  • Toward interoperable bioscience data

    Susanna-Assunta Sansone;Philippe Rocca-Serra;Dawn Field;Eamonn Maguire

  • Gene Ontology Consortium. The Gene Ontology (GO) database and informatics resource

    Harris Ma;J. Clark;A. Ireland;J. Lomax

  • The Gene Ontology: Enhancements for 2011

    J. A. Blake;M. Dolan;H. Drabkin;D. P. Hill

  • neXtProt: a knowledge platform for human proteins

    Lydie Lane;Ghislaine Argoud-puy;Aurore Britan;Isabelle Cusin

  • Gene Ontology: Pitfalls, Biases, and Remedies.

    Pascale Gaudet;Christophe Dessimoz;Christophe Dessimoz;Christophe Dessimoz

  • The neXtProt knowledgebase on human proteins: 2017 update.

    Pascale Gaudet;Pascale Gaudet;Pierre-André Michel;Monique Zahn-Zabal;Aurore Britan

  • DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation.

    Federica Quaglia;Federica Quaglia;Bálint Mészáros;Edoardo Salladini;András Hatos

  • The Gene Ontology's Reference Genome Project: A Unified Framework for Functional Annotation across Species

    Pascale Gaudet;Rex L Chisholm;Tanya Berardini;Emily Dimmer

  • Primer on the Gene Ontology

    Pascale Gaudet;Nives Škunca;Nives Škunca;Nives Škunca;James C. Hu;Christophe Dessimoz

  • neXtProt: organizing protein knowledge in the context of human proteome projects.

    Pascale Gaudet;Ghislaine Argoud-Puy;Isabelle Cusin;Paula Duek

  • Gene Ontology Causal Activity Modeling (GO-CAM) moves beyond GO annotations to structured descriptions of biological functions and systems.

    Paul D. Thomas;David P. Hill;Huaiyu Mi;David Osumi-Sutherland

  • The neXtProt knowledgebase on human proteins: current status

    Pascale Gaudet;Pierre-André Michel;Monique Zahn-Zabal;Isabelle Cusin

  • BioCreative III interactive task: an overview.

    Cecilia N Arighi;Phoebe M Roberts;Shashank Agarwal;Sanmitra Bhattacharya

  • dictyBase—a Dictyostelium bioinformatics resource update

    Petra Fey;Pascale Gaudet;Tomaz Curk;Blaz Zupan

Frequent Co-Authors

Rex L. Chisholm
Rex L. Chisholm Northwestern University
Amos Marc Bairoch
Amos Marc Bairoch Swiss Institute of Bioinformatics
Christopher J. Mungall
Christopher J. Mungall Lawrence Berkeley National Laboratory
Suzanna E. Lewis
Suzanna E. Lewis Lawrence Berkeley National Laboratory
Paul D. Thomas
Paul D. Thomas University of Southern California
Judith A. Blake
Judith A. Blake Edith Cowan University
Sandra Orchard
Sandra Orchard European Bioinformatics Institute
Paul W. Sternberg
Paul W. Sternberg California Institute of Technology
Patrick Ruch
Patrick Ruch Swiss Institute of Bioinformatics
Philippe Rocca-Serra
Philippe Rocca-Serra University of Oxford

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