Jürgen Cox

Overview

Best Publications

• MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification.

  Jiirgen Cox;Matthias Mann

  23075
  Citations

• The Perseus computational platform for comprehensive analysis of (prote)omics data.

  Stefka Tyanova;Tikira Temu;Pavel Sinitcyn;Arthur Carlson

  7127
  Citations

• The PRIDE database and related tools and resources in 2019: improving support for quantification data.

  Yasset Perez-Riverol;Attila Csordas;Jingwen Bai;Manuel Bernal-Llinares

  6891
  Citations

• Andromeda: a peptide search engine integrated into the MaxQuant environment

  Jürgen Cox;Nadin Neuhauser;Annette Michalski;Richard A. Scheltema

  5771
  Citations

• Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ

  Jürgen Cox;Marco Y. Hein;Christian A. Luber;Igor Paron

  4883
  Citations

• Quantitative Phosphoproteomics Reveals Widespread Full Phosphorylation Site Occupancy During Mitosis

  Jesper V. Olsen;Michiel Vermeulen;Anna Santamaria;Chanchal Kumar

  1691
  Citations

• A Human Interactome in Three Quantitative Dimensions Organized by Stoichiometries and Abundances

  Marco Y. Hein;Nina C. Hubner;Ina Poser;Juergen Cox

  1275
  Citations

• Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast.

  Lyris M. F. de Godoy;Jesper V. Olsen;Jürgen Cox;Michael L. Nielsen

  1088
  Citations

• A Proteome-wide, Quantitative Survey of In Vivo Ubiquitylation Sites Reveals Widespread Regulatory Roles

  Sebastian A. Wagner;Petra Beli;Brian T. Weinert;Michael L. Nielsen

  1005
  Citations

• Ultradeep human phosphoproteome reveals a distinct regulatory nature of Tyr and Ser/Thr-based signaling.

  Kirti Sharma;Rochelle C.J. D’Souza;Stefka Tyanova;Christoph Schaab

  981
  Citations

• A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics

  Jürgen Cox;Ivan Matic;Maximiliane Hilger;Nagarjuna Nagaraj

  875
  Citations

• Quantitative, High-Resolution Proteomics for Data-Driven Systems Biology

  Jürgen Cox;Matthias Mann

  825
  Citations

• 1D and 2D annotation enrichment: a statistical method integrating quantitative proteomics with complementary high-throughput data.

  Juergen Cox;Matthias Mann

  783
  Citations

• Online Parallel Accumulation–Serial Fragmentation (PASEF) with a Novel Trapped Ion Mobility Mass Spectrometer *

  Florian Meier;Andreas David Brunner;Scarlet Koch;Heiner Koch

  777
  Citations

• Direct identification of clinically relevant neoepitopes presented on native human melanoma tissue by mass spectrometry

  Michal Bassani-Sternberg;Eva Bräunlein;Richard Klar;Thomas Engleitner;Thomas Engleitner

  720
  Citations

• Quantitative proteomics reveals subset-specific viral recognition in dendritic cells.

  Christian A. Luber;Jürgen Cox;Henning Lauterbach;Ben Fancke

  674
  Citations

• A 'proteomic ruler' for protein copy number and concentration estimation without spike-in standards

  Jacek R. Wiśniewski;Marco Y. Hein;Juergen Cox;Matthias Mann

  609
  Citations

• Is proteomics the new genomics

  Jürgen Cox;Matthias Mann

  587
  Citations

• Securin is required for chromosomal stability in human cells

  Bert Vogelstein;Kenneth W. Kinzler;Prasad Jallepalli;Christoph Lengauer

  559
  Citations

• Global, quantitative and dynamic mapping of protein subcellular localization.

  Daniel N. Itzhak;Stefka Tyanova;Jürgen Cox;Georg H. H. Borner

  553
  Citations