World's Best Scientists 2026 revealed!

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Molecular Biology

D-Index
42
Citations
7384
World Ranking
3021
National Ranking
76

Overview

James K. Hane is affiliated with Curtin University in Australia and conducts research primarily within the fields of Agricultural and Biological Sciences, as well as Biochemistry, Genetics, and Molecular Biology. Their research focuses extensively on plant pathology and molecular interactions, particularly in the context of fungal diseases affecting plants.

The scientist's main areas of study include Plant Science, Cell Biology, Molecular Biology, Ecology, Evolution, Behavior and Systematics, and Genetics. Their work covers a range of topics related to plant pathogens and fungal diseases, plant disease resistance and genetics, plant-microbe interactions and immunity, as well as wheat and barley genetics and pathology. Additionally, they engage in studies on mycotoxins in agriculture and food, along with genomics and phylogenetic analyses.

James K. Hane's publication record highlights contributions to several journals. Prominent publication venues where they frequently appear include Frontiers in Microbiology, bioRxiv (Cold Spring Harbor Laboratory), the International Journal of Molecular Sciences, Scientific Reports, and BMC Genomics.

Selected recent papers authored or co-authored include:

  • "CATAStrophy," a Genome-Informed Trophic Classification of Filamentous Plant Pathogens - How Many Different Types of Filamentous Plant Pathogens Are There? (2020, Frontiers in Microbiology)
  • An automated and combinative method for the predictive ranking of candidate effector proteins of fungal plant pathogens (2021, Scientific Reports)
  • Chromosome-level genome assembly and manually-curated proteome of model necrotroph Parastagonospora nodorum Sn15 reveals a genome-wide trove of candidate effector homologs, and redundancy of virulence-related functions within an accessory chromosome (2021, BMC Genomics)
  • Reference Genome Assembly for Australian Ascochyta rabiei Isolate ArME14 (2020, G3 Genes Genomes Genetics)
  • Improved gene annotation of the fungal wheat pathogen Zymoseptoria tritici based on combined Iso-Seq and RNA-Seq evidence (2023, bioRxiv [Cold Spring Harbor Laboratory])

Frequent coauthors of James K. Hane include Darcy Jones, Lina Rozano, Ricardo L. Mancera, Kar-Chun Tan, and Johannes W. Debler. These collaborations have contributed to a consistent output of scientific work in the plant pathology domain.

The integration of genome-level analysis and molecular biology techniques is a characteristic feature of the scientist's methodology, focusing on both pathogen classification and functional genomics approaches within plant-pathogen systems.

No records of book publications or awards were found in the available data.

Best Publications

  • Draft genome sequence of chickpea ( Cicer arietinum ) provides a resource for trait improvement

    Rajeev K Varshney;Rajeev K Varshney;Chi Song;Rachit K Saxena;Sarwar Azam

  • Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis

    Stephen B. Goodwin;Sarrah Ben M'Barek;Braham Dhillon;Alexander H J Wittenberg

  • Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations

    Thierry Rouxel;Jonathan Grandaubert;James K. Hane;Claire Hoede

  • Dothideomycete-Plant Interactions Illuminated by Genome Sequencing and EST Analysis of the Wheat Pathogen Stagonospora nodorum

    James K. Hane;Rohan G.T. Lowe;Peter S. Solomon;Kar-Chun Tan

  • Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence.

    Viola A. Manning;Iovanna Pandelova;Braham Dhillon;Larry J. Wilhelm;Larry J. Wilhelm

  • A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: insights into plant–microbe interactions and legume evolution

    James K. Hane;Yao Ming;Lars G. Kamphuis;Matthew N. Nelson

  • Genome Sequencing and Comparative Genomics of the Broad Host-Range Pathogen Rhizoctonia solani AG8

    James K. Hane;Jonathan P. Anderson;Angela H. Williams;Jana Sperschneider

  • CodingQuarry: highly accurate hidden Markov model gene prediction in fungal genomes using RNA-seq transcripts

    Alison C Testa;James K Hane;Simon R Ellwood;Richard P Oliver

  • Evolution of Linked Avirulence Effectors in Leptosphaeria maculans Is Affected by Genomic Environment and Exposure to Resistance Genes in Host Plants

    Angela P. Van de Wouw;Anton J. Cozijnsen;James K. Hane;Patrick C. Brunner

  • RIPCAL: a tool for alignment-based analysis of repeat-induced point mutations in fungal genomic sequences

    James K Hane;Richard P Oliver

  • The first gene-based map of Lupinus angustifolius L.-location of domestication genes and conserved synteny with Medicago truncatula

    Matthew N. Nelson;Huyen T. T. Phan;Simon R. Ellwood;Paula M. Moolhuijzen

  • Construction of a comparative genetic map in faba bean (Vicia faba L.); conservation of genome structure with Lens culinaris

    Simon R. Ellwood;Huyen T.T. Phan;Megan Jordan;James K. Hane

  • A novel mode of chromosomal evolution peculiar to filamentous Ascomycete fungi

    James K Hane;James K Hane;Thierry Rouxel;Barbara J Howlett;Gert H J Kema

  • Extensive macrosynteny between Medicago truncatula and Lens culinaris ssp. culinaris

    Huyen T. T. Phan;Simon R. Ellwood;James K. Hane;Rebecca Ford

  • Accessories Make the Outfit: Accessory Chromosomes and Other Dispensable DNA Regions in Plant-Pathogenic Fungi

    Stefania Bertazzoni;Angela H Williams;Darcy A Jones;Robert A Syme

  • Comparative genomics and prediction of conditionally dispensable sequences in legume-infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors

    Angela H. Williams;Mamta Sharma;Louise F. Thatcher;Sarwar Azam

  • A first genome assembly of the barley fungal pathogen Pyrenophora teres f. teres

    Simon R Ellwood;Zhaohui Liu;Rob A Syme;Zhibing Lai

  • OcculterCut: A Comprehensive Survey of AT-Rich Regions in Fungal Genomes

    Alison C. Testa;Richard P. Oliver;James K. Hane

  • Adapting legume crops to climate change using genomic approaches

    Mahsa Mousavi‐Derazmahalleh;Philipp E. Bayer;James K. Hane;Babu Valliyodan

  • Transcriptome sequencing of different narrow-leafed lupin tissue types provides a comprehensive uni-gene assembly and extensive gene-based molecular markers.

    Lars G. Kamphuis;Lars G. Kamphuis;James K. Hane;Matthew N. Nelson;Lingling Gao

Frequent Co-Authors

Richard P. Oliver
Richard P. Oliver Curtin University
Karam B. Singh
Karam B. Singh Commonwealth Scientific and Industrial Research Organisation
Lars G. Kamphuis
Lars G. Kamphuis Curtin University
Peter S. Solomon
Peter S. Solomon Australian National University
Matthew N. Nelson
Matthew N. Nelson Commonwealth Scientific and Industrial Research Organisation
Kar-Chun Tan
Kar-Chun Tan Curtin University
Rajeev K. Varshney
Rajeev K. Varshney Murdoch University
Simon R. Ellwood
Simon R. Ellwood Curtin University
Jana Sperschneider
Jana Sperschneider Australian National University
Timothy L. Friesen
Timothy L. Friesen United States Department of Agriculture

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