World's Best Scientists 2026 revealed!
Hideyuki Doi

Hideyuki Doi

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Ecology and Evolution
Japan
2026

D-Index & Metrics

Ecology and Evolution

D-Index
53
Citations
10299
World Ranking
3307
National Ranking
9

Research.com Recognitions

  • 2026 - Research.com Ecology and Evolution in Japan Leader Award

Overview

Hideyuki Doi is affiliated with Kyoto University in Japan. Their research primarily spans the fields of Environmental Science and Biochemistry, Genetics and Molecular Biology, with a strong focus on Ecology, Molecular Biology, Nature and Landscape Conservation, Oceanography, and Plant Science.

The scientist has contributed substantially to research topics such as Environmental DNA in Biodiversity Studies, Microbial Community Ecology and Physiology, Identification and Quantification in Food, Fish Ecology and Management Studies, Protist Diversity and Phylogeny, Isotope Analysis in Ecology, and Mycorrhizal Fungi and Plant Interactions.

Frequent co-authors collaborating with Hideyuki Doi include:

  • Toshifumi Minamoto
  • Izumi Katano
  • Shunsuke Matsuoka
  • Teruhiko Takahara
  • Tatsuya Saito

Their research has been published across several venues, notably:

  • Zenodo (CERN European Organization for Nuclear Research)
  • bioRxiv (Cold Spring Harbor Laboratory)
  • Environmental DNA
  • Scientific Reports
  • Freshwater Biology

Noteworthy recent papers by Hideyuki Doi include:

  • "Global diversity of microbial communities in marine sediment" (2020, Proceedings of the National Academy of Sciences)
  • "An illustrated manual for environmental DNA research: Water sampling guidelines and experimental protocols" (2020, Environmental DNA)
  • "Trade-offs between reducing complex terminology and producing accurate interpretations from environmental DNA: Comment on "Environmental DNA: What's behind the term?" by Pawlowski et al., (2020)" (2021, Molecular Ecology)
  • "Environmental DNA metabarcoding for biodiversity monitoring of a highly diverse tropical fish community in a coral reef lagoon: Estimation of species richness and detection of habitat segregation" (2020, Environmental DNA)
  • "Sedimentary DNA tracks decadal-centennial changes in fish abundance" (2020, Communications Biology)

Best Publications

  • Estimation of fish biomass using environmental DNA.

    Teruhiko Takahara;Toshifumi Minamoto;Hiroki Yamanaka;Hideyuki Doi

  • Using Environmental DNA to Estimate the Distribution of an Invasive Fish Species in Ponds

    Teruhiko Takahara;Toshifumi Minamoto;Hideyuki Doi

  • Adaptive responses of animals to climate change are most likely insufficient

    Viktoriia Radchuk;Thomas Reed;Céline Teplitsky;Martijn van der Pol

  • Environmental DNA analysis for estimating the abundance and biomass of stream fish

    Hideyuki Doi;Ryutei Inui;Yoshihisa Akamatsu;Kazuki Kanno

  • Global diversity of microbial communities in marine sediment.

    Tatsuhiko Hoshino;Hideyuki Doi;Go-Ichiro Uramoto;Lars Wörmer

  • Use of droplet digital PCR for estimation of fish abundance and biomass in environmental DNA surveys.

    Hideyuki Doi;Kimiko Uchii;Teruhiko Takahara;Saeko Matsuhashi

  • Droplet Digital Polymerase Chain Reaction (PCR) Outperforms Real-Time PCR in the Detection of Environmental DNA from an Invasive Fish Species

    Hideyuki Doi;Teruhiko Takahara;Toshifumi Minamoto;Saeko Matsuhashi

  • The detection of aquatic macroorganisms using environmental DNA analysis—A review of methods for collection, extraction, and detection

    Satsuki Tsuji;Satsuki Tsuji;Teruhiko Takahara;Hideyuki Doi;Naoki Shibata

  • Cadmium Induces Nuclear Export of Bach1, a Transcriptional Repressor of Heme Oxygenase-1 Gene

    Hiroshi Suzuki;Satoshi Tashiro;Jiying Sun;Hideyuki Doi

  • An illustrated manual for environmental DNA research: Water sampling guidelines and experimental protocols

    Toshifumi Minamoto;Masaki Miya;Tetsuya Sado;Satoquo Seino

  • Spatial shifts in food sources for macrozoobenthos in an estuarine ecosystem: Carbon and nitrogen stable isotope analyses

    Hideyuki Doi;Masatoshi Matsumasa;Terumasa Toya;Nobuya Satoh

  • 15N/14N ratios of amino acids as a tool for studying terrestrial food webs: a case study of terrestrial insects (bees, wasps, and hornets)

    Yoshito Chikaraishi;Nanako O. Ogawa;Hideyuki Doi;Naohiko Ohkouchi

  • A novel environmental DNA approach to quantify the cryptic invasion of non-native genotypes

    Kimiko Uchii;Kimiko Uchii;Hideyuki Doi;Hideyuki Doi;Toshifumi Minamoto

  • Environmental DNA metabarcoding for fish community analysis in backwater lakes: A comparison of capture methods

    Kazuya Fujii;Hideyuki Doi;Shunsuke Matsuoka;Mariko Nagano

  • Spatial patterns of autochthonous and allochthonous resources in aquatic food webs

    Hideyuki Doi

  • Phenological timings of leaf budburst with climate change in Japan

    Hideyuki Doi;Izumi Katano

  • Use of a Filter Cartridge for Filtration of Water Samples and Extraction of Environmental DNA.

    Masaki Miya;Toshifumi Minamoto;Hiroki Yamanaka;Shin-Ichiro Oka

  • Effects of sample processing on the detection rate of environmental DNA from the Common Carp (Cyprinus carpio)

    Teruhiko Takahara;Toshifumi Minamoto;Hideyuki Doi

  • Latitudinal patterns in the phenological responses of leaf colouring and leaf fall to climate change in Japan

    Hideyuki Doi;Mayumi Takahashi

  • Heterogeneous intra-annual climatic changes drive different phenological responses at two trophic levels

    Hideyuki Doi;Oscar Gordo;Izumi Katano

  • A perspective on match/mismatch of phenology in community contexts

    Takefumi Nakazawa;Hideyuki Doi

Frequent Co-Authors

Toshifumi Minamoto
Toshifumi Minamoto Kobe University
Hiroki Yamanaka
Hiroki Yamanaka Ryukoku University
Masaki Miya
Masaki Miya Natural History Museum and Institute
Ryuji Suzuki
Ryuji Suzuki National Institutes of Health
Helmut Hillebrand
Helmut Hillebrand Carl von Ossietzky University of Oldenburg
Nelson G. Hairston
Nelson G. Hairston Cornell University
Jotaro Urabe
Jotaro Urabe Tohoku University
Takashi Osono
Takashi Osono Doshisha University
Kayo Inaba
Kayo Inaba Kyoto University
Moriaki Yasuhara
Moriaki Yasuhara University of Hong Kong

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