David L. Tabb

Overview

Best Publications

• Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

  Brendan MacLean;Daniela M. Tomazela;Nicholas Shulman;Matthew Chambers

  5146
  Citations

• A cross-platform toolkit for mass spectrometry and proteomics

  Matthew C Chambers;Brendan Maclean;Robert Burke;Dario Amodei

  4261
  Citations

• A proteomic view of the Plasmodium falciparum life cycle

  Laurence Florens;Michael P. Washburn;J. Dale Raine;Robert M. Anthony

  1696
  Citations

• DTASelect and Contrast: Tools for Assembling and Comparing Protein Identifications from Shotgun Proteomics

  Tabb Dl;McDonald Wh;Yates Jr rd

  1621
  Citations

• Proteogenomic characterization of human colon and rectal cancer

  Bing Zhang;Jing Wang;Xiaojing Wang;Jing Zhu

  1431
  Citations

• Multi-site assessment of the precision and reproducibility of multiple reaction monitoring–based measurements of proteins in plasma

  Terri A. Addona;Susan E. Abbatiello;Birgit Schilling;Steven J. Skates

  1155
  Citations

• Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer

  Hui Zhang;Tao Liu;Zhen Zhang;Samuel H. Payne

  991
  Citations

• Repeatability and Reproducibility in Proteomic Identifications by Liquid Chromatography−Tandem Mass Spectrometry

  David L. Tabb;Lorenzo Vega-Montoto;Lorenzo Vega-Montoto;Paul A. Rudnick;Asokan Mulayath Variyath;Asokan Mulayath Variyath

  654
  Citations

• MyriMatch: highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis.

  David L. Tabb;and Christopher G. Fernando;Matthew C. Chambers

  646
  Citations

• Proteogenomic Analysis of Human Colon Cancer Reveals New Therapeutic Opportunities.

  Suhas Vasaikar;Chen Huang;Xiaojing Wang;Vladislav A. Petyuk

  614
  Citations

• Proteomic Parsimony through Bipartite Graph Analysis Improves Accuracy and Transparency

  Bing Zhang;Matthew C. Chambers;David L. Tabb

  415
  Citations

• MS1, MS2, and SQT—three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications

  W. Hayes McDonald;David L. Tabb;David L. Tabb;Rovshan G. Sadygov;Michael J. MacCoss

  397
  Citations

• GutenTag: high-throughput sequence tagging via an empirically derived fragmentation model.

  David L. Tabb;Anita Saraf;John R. Yates

  395
  Citations

• Cleavage N-Terminal to Proline: Analysis of a Database of Peptide Tandem Mass Spectra

  Linda A. Breci;David L. Tabb;John R. Yates;Vicki H. Wysocki

  391
  Citations

• IDPicker 2.0: Improved protein assembly with high discrimination peptide identification filtering.

  Ze Qiang Ma;Surendra Dasari;Matthew C. Chambers;Michael D. Litton

  385
  Citations

• Proteogenomic Landscape of Breast Cancer Tumorigenesis and Targeted Therapy.

  Karsten Krug;Eric J. Jaehnig;Shankha Satpathy;Lili Blumenberg

  371
  Citations

• Statistical characterization of ion trap tandem mass spectra from doubly charged tryptic peptides.

  David L. Tabb;Lori L. Smith;Linda A. Breci;Vicki H. Wysocki

  331
  Citations

• Validation of Tandem Mass Spectrometry Database Search Results Using DTASelect

  Daniel Cociorva;David L. Tabb;John R. Yates

  327
  Citations

• Employing ProteoWizard to Convert Raw Mass Spectrometry Data

  Jerry D. Holman;David L. Tabb;Parag Mallick

  313
  Citations

• Identification of Proteins at Active, Stalled, and Collapsed Replication Forks Using Isolation of Proteins on Nascent DNA (iPOND) Coupled with Mass Spectrometry

  Bianca M. Sirbu;W. Hayes McDonald;Huzefa Dungrawala;Akosua Badu-Nkansah

  307
  Citations