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Cedric Notredame

Cedric Notredame

Pompeu Fabra University
Spain

D-Index & Metrics

Biology and Biochemistry

D-Index
57
Citations
39749
World Ranking
13493
National Ranking
284

Cedric Notredame publication distribution in Biology and Biochemistry in 2026

The chart shows the distribution of publications by all Research.com ranked scientists in the field of Biology and Biochemistry in 2026. The highlighted bar marks where Cedric Notredame sits on this spectrum.

47–56 publications: 8 scientists 57–66 publications: 35 scientists 67–76 publications: 106 scientists 77–86 publications: 231 scientists 87–96 publications: 414 scientists 97–106 publications: 546 scientists 107–116 publications: 704 scientists 117–126 publications: 849 scientists 127–136 publications: 980 scientists 137–146 publications: 942 scientists 147–156 publications: 969 scientists 157–166 publications: 950 scientists 167–176 publications: 951 scientists 177–186 publications: 915 scientists 187–196 publications: 787 scientists 197–206 publications: 841 scientists 207–216 publications: 735 scientists 217–226 publications: 709 scientists 227–236 publications: 651 scientists 237–246 publications: 605 scientists 247–256 publications: 510 scientists 257–266 publications: 524 scientists 267–276 publications: 434 scientists 277–286 publications: 418 scientists 287–296 publications: 350 scientists 297–306 publications: 363 scientists 307–316 publications: 315 scientists 317–326 publications: 296 scientists 327–336 publications: 261 scientists 337–346 publications: 240 scientists 347–356 publications: 219 scientists 357–366 publications: 197 scientists 367–376 publications: 154 scientists 377–386 publications: 161 scientists 387–396 publications: 155 scientists 397–406 publications: 145 scientists 407–416 publications: 124 scientists 417–426 publications: 112 scientists 427–436 publications: 132 scientists 437–446 publications: 116 scientists 447–456 publications: 99 scientists 457–466 publications: 81 scientists 467–476 publications: 91 scientists 477–486 publications: 80 scientists 487–496 publications: 80 scientists 497–506 publications: 60 scientists 507–516 publications: 36 scientists 517–526 publications: 46 scientists 527–536 publications: 54 scientists 537–546 publications: 44 scientists 547–556 publications: 43 scientists 557–566 publications: 43 scientists 567–576 publications: 42 scientists 577–586 publications: 25 scientists 587–596 publications: 34 scientists 597–606 publications: 23 scientists 607–616 publications: 33 scientists 617–626 publications: 31 scientists 627–636 publications: 27 scientists 637–646 publications: 25 scientists 647–656 publications: 28 scientists 657–666 publications: 34 scientists 667–676 publications: 18 scientists 677–686 publications: 16 scientists 687–696 publications: 10 scientists 697–706 publications: 12 scientists 707–716 publications: 21 scientists 717–726 publications: 12 scientists 727–736 publications: 12 scientists 737–746 publications: 10 scientists 747–756 publications: 7 scientists 757–766 publications: 13 scientists 767–776 publications: 15 scientists 777–786 publications: 13 scientists 787–796 publications: 9 scientists 797–806 publications: 9 scientists 807–816 publications: 7 scientists 817–826 publications: 4 scientists 827–836 publications: 9 scientists 837–846 publications: 7 scientists 847–856 publications: 3 scientists 857–866 publications: 5 scientists 867–876 publications: 5 scientists 877–886 publications: 11 scientists 887–896 publications: 3 scientists 897–906 publications: 4 scientists 907–916 publications: 7 scientists 917–926 publications: 5 scientists 927–936 publications: 6 scientists 937–946 publications: 6 scientists 947–956 publications: 3 scientists 957–966 publications: 7 scientists 967–976 publications: 2 scientists 977–986 publications: 2 scientists 987–996 publications: 1 scientists 997–1,006 publications: 5 scientists 1,007–1,016 publications: 2 scientists 1,017–1,026 publications: 2 scientists 1,027 publications: 1 scientists 1,028+ publications: 100 scientists
47 publications 1,028+

This scientist: 124 publications — 14th percentile

14% of scientists in this discipline score the same or lower.

The last bar groups every scientist with 1,028 publications or more.

Cedric Notredame D-index placement in Biology and Biochemistry in 2026

The chart shows the D-index (discipline H-index) distribution of Biology and Biochemistry scientists ranked by Research.com in 2026. The highlighted bar marks where Cedric Notredame sits on this spectrum.

40–41 D-Index: 80 scientists 42–43 D-Index: 183 scientists 44–45 D-Index: 317 scientists 46–47 D-Index: 504 scientists 48–49 D-Index: 718 scientists 50–51 D-Index: 900 scientists 52–53 D-Index: 1,026 scientists 54–55 D-Index: 1,150 scientists 56–57 D-Index: 1,236 scientists 58–59 D-Index: 1,253 scientists 60–61 D-Index: 1,163 scientists 62–63 D-Index: 1,131 scientists 64–65 D-Index: 1,032 scientists 66–67 D-Index: 897 scientists 68–69 D-Index: 814 scientists 70–71 D-Index: 715 scientists 72–73 D-Index: 709 scientists 74–75 D-Index: 596 scientists 76–77 D-Index: 512 scientists 78–79 D-Index: 473 scientists 80–81 D-Index: 412 scientists 82–83 D-Index: 373 scientists 84–85 D-Index: 358 scientists 86–87 D-Index: 285 scientists 88–89 D-Index: 273 scientists 90–91 D-Index: 227 scientists 92–93 D-Index: 208 scientists 94–95 D-Index: 193 scientists 96–97 D-Index: 153 scientists 98–99 D-Index: 157 scientists 100–101 D-Index: 148 scientists 102–103 D-Index: 120 scientists 104–105 D-Index: 113 scientists 106–107 D-Index: 100 scientists 108–109 D-Index: 86 scientists 110–111 D-Index: 67 scientists 112–113 D-Index: 72 scientists 114–115 D-Index: 73 scientists 116–117 D-Index: 64 scientists 118–119 D-Index: 53 scientists 120–121 D-Index: 60 scientists 122–123 D-Index: 54 scientists 124–125 D-Index: 43 scientists 126–127 D-Index: 38 scientists 128–129 D-Index: 49 scientists 130–131 D-Index: 26 scientists 132–133 D-Index: 18 scientists 134–135 D-Index: 23 scientists 136–137 D-Index: 32 scientists 138–139 D-Index: 32 scientists 140–141 D-Index: 27 scientists 142–143 D-Index: 19 scientists 144–145 D-Index: 22 scientists 146–147 D-Index: 12 scientists 148–149 D-Index: 16 scientists 150–151 D-Index: 14 scientists 152–153 D-Index: 10 scientists 154–155 D-Index: 13 scientists 156–157 D-Index: 10 scientists 158–159 D-Index: 7 scientists 160–161 D-Index: 9 scientists 162–163 D-Index: 13 scientists 164–165 D-Index: 4 scientists 166 D-Index: 4 scientists 167+ D-Index: 98 scientists
40 D-Index 167+

This scientist: 57 D-Index — 31st percentile

31% of scientists in this discipline score the same or lower.

The last bar groups every scientist with 167 D-Index or more.

Overview

Cedric Notredame is affiliated with Pompeu Fabra University in Spain. Their research primarily spans the field of Biochemistry, Genetics and Molecular Biology, with a specific focus on Molecular Biology. Their subfields of study also include Ecology, Evolution, Behavior and Systematics, as well as Epidemiology and Information Systems and Management.

Their work covers a range of specialized topics including:

  • Genomics and Phylogenetic Studies
  • Machine Learning in Bioinformatics
  • RNA and protein synthesis mechanisms
  • RNA modifications and cancer
  • Trypanosoma species research and implications
  • Scientific Computing and Data Management
  • Research Data Management Practices

Cedric Notredame's research has been published in multiple venues, with frequent contributions to:

  • Zenodo (CERN European Organization for Nuclear Research)
  • bioRxiv (Cold Spring Harbor Laboratory)
  • Bioinformatics
  • Science Advances
  • PLoS Pathogens

Recent papers include:

  • Highly significant improvement of protein sequence alignments with AlphaFold2, 2022, Bioinformatics
  • A long noncoding RNA promotes parasite differentiation in African trypanosomes, 2022, Science Advances
  • Empowering bioinformatics communities with Nextflow and nf-core, 2024, bioRxiv (Cold Spring Harbor Laboratory)
  • Four layer multi-omics reveals molecular responses to aneuploidy in Leishmania, 2022, PLoS Pathogens
  • A long non-coding RNA controls parasite differentiation in African trypanosomes, 2020, bioRxiv (Cold Spring Harbor Laboratory)

Cedric Notredame collaborates frequently with several researchers, including:

  • Athanasios Baltzis
  • Leila Mansouri
  • Björn E. Langer
  • Ionas Erb
  • Cedrik Magis

Best Publications

  • T-Coffee: A novel method for fast and accurate multiple sequence alignment.

    Cédric Notredame;Cédric Notredame;Cédric Notredame;Desmond G Higgins;Jaap Heringa

  • The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.

    Thomas Derrien;Rory Johnson;Giovanni Bussotti;Andrea Tanzer

  • An integrated encyclopedia of DNA elements in the human genome

    Ian Dunham;Anshul Kundaje;Shelley F. Aldred;Patrick J. Collins

  • Nextflow enables reproducible computational workflows

    Paolo Di Tommaso;Maria Chatzou;Evan W Floden;Pablo Prieto Barja

  • A comparative encyclopedia of DNA elements in the mouse genome

    Feng Yue;Feng Yue;Yong Cheng;Alessandra Breschi;Jeff Vierstra

  • Long Noncoding RNAs with Enhancer-like Function in Human Cells

    Ulf Andersson Ørom;Thomas Derrien;Malte Beringer;Kiranmai Gumireddy

  • T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension

    Paolo Di Tommaso;Sebastien Moretti;Ioannis Xenarios;Miquel Orobitg

  • SAGA: sequence alignment by genetic algorithm.

    Cédric Notredame;Desmond G. Higgins

  • M-Coffee : Combining multiple sequence alignment methods with T-Coffee

    Iain M. Wallace;Orla O'Sullivan;Desmond G. Higgins;Cedric Notredame

  • Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee

    Fabrice Armougom;Sébastien Moretti;Olivier Poirot;Stéphane Audic

  • Recent progress in multiple sequence alignment: a survey.

    Cédric Notredame

  • Multi-Platform Next-Generation Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis

    Rami A. Dalloul;Julie A Long;Aleksey V. Zimin;Luqman Aslam

  • Epistasis as the primary factor in molecular evolution

    Michael S. Breen;Carsten Kemena;Peter K. Vlasov;Cedric Notredame

  • 3DCoffee: combining protein sequences and structures within multiple sequence alignments.

    Orla O'Sullivan;Karsten Suhre;Chantal Abergel;Desmond G Higgins

  • Bioinformatics For Dummies

    Jean-Michel Claverie;Cedric Notredame

  • Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project

    Leif Andersson;Leif Andersson;Alan L. Archibald;Cynthia D. Bottema;Rudiger Brauning

  • Tcoffee@igs: a web server for computing, evaluating and combining multiple sequence alignments

    Olivier Poirot;Eamonn O'Toole;Cedric Notredame

  • COFFEE: an objective function for multiple sequence alignments.

    Cédric Notredame;Liisa Holm;Desmond G. Higgins

  • Recent evolutions of multiple sequence alignment algorithms.

    Cédric Notredame

  • MULTICHANNEL SEQUENCE ANALYSIS APPLIED TO SOCIAL SCIENCE DATA

    Jacques-Antoine Gauthier;Eric D. Widmer;Philipp Bucher;Cédric Notredame

Frequent Co-Authors

Desmond G. Higgins
Desmond G. Higgins University College Dublin
Philipp Bucher
Philipp Bucher École Polytechnique Fédérale de Lausanne
Roderic Guigó
Roderic Guigó Pompeu Fabra University
Javier Herrero
Javier Herrero University College London
Thomas R. Gingeras
Thomas R. Gingeras Cold Spring Harbor Laboratory
Paul Flicek
Paul Flicek The Jackson Laboratory
Mara Dierssen
Mara Dierssen Centre for Genomic Regulation
Mark Groudine
Mark Groudine Fred Hutchinson Cancer Research Center
Manolis Kellis
Manolis Kellis MIT
Fyodor A. Kondrashov
Fyodor A. Kondrashov Institute of Science and Technology Austria

External Links

Personal website of Cedric Notredame

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Best Scientists Citing Cedric Notredame

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John L. Rinn

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L. Aravind

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National Institutes of Health

Publications: 62

Roderic Guigó

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Publications: 51

John S. Mattick

John S. Mattick

University of New South Wales

Publications: 48

Axel Visel

Axel Visel

Lawrence Berkeley National Laboratory

Publications: 48

Eugene V. Koonin

Eugene V. Koonin

National Institutes of Health

Publications: 48

Chris P. Ponting

Chris P. Ponting

University of Edinburgh

Publications: 48

Piero Carninci

Piero Carninci

RIKEN

Publications: 43

Peter F. Stadler

Peter F. Stadler

Leipzig University

Publications: 40

Len A. Pennacchio

Len A. Pennacchio

Lawrence Berkeley National Laboratory

Publications: 39

Eric S. Lander

Eric S. Lander

Broad Institute

Publications: 38

Bing Ren

Bing Ren

New York Genome Center

Publications: 38

Nick V. Grishin

Nick V. Grishin

The University of Texas Southwestern Medical Center

Publications: 37

Rory Johnson

Rory Johnson

University College Dublin

Publications: 37

Marcel E. Dinger

Marcel E. Dinger

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Publications: 36

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