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Genetics

D-Index
56
Citations
38857
World Ranking
3446
National Ranking
14

Overview

Rory Johnson is affiliated with University College Dublin in Ireland and has a research focus primarily within the field of Biochemistry, Genetics and Molecular Biology. Their work spans several subfields including Molecular Biology, Cancer Research, Cardiology and Cardiovascular Medicine, Genetics, and Endocrinology.

The research topics covered by Rory Johnson include:

  • Cancer-related molecular mechanisms research
  • RNA modifications and cancer
  • RNA Research and Splicing
  • Cancer Genomics and Diagnostics
  • CRISPR and Genetic Engineering
  • Genomics and Phylogenetic Studies
  • RNA and protein synthesis mechanisms

They have contributed to frequent publications in venues such as:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Nature Communications
  • Nucleic Acids Research
  • Nature
  • Hematological Oncology

Some of Rory Johnson's recent publications include:

  • "Long non-coding RNAs: definitions, functions, challenges and recommendations" (2023, Nature Reviews Molecular Cell Biology)
  • "GENCODE 2021" (2020, Nucleic Acids Research)
  • "Analyses of non-coding somatic drivers in 2,658 cancer whole genomes" (2020, Nature)
  • "GENCODE: reference annotation for the human and mouse genomes in 2023" (2022, Nucleic Acids Research)
  • "Comprehensive Analysis of Genetic Ancestry and Its Molecular Correlates in Cancer" (2020, Cancer Cell)

Rory Johnson's frequent coauthors include:

  • Andrés Lanzós
  • Mark Gerstein
  • Carlos Pulido-Quetglas
  • Roderic Guigó
  • Lars Feuerbach

Their scholarly output underpins ongoing research in cancer molecular mechanisms, RNA biology, and genomics, integrating experimental and computational approaches. The combination of publication venues and collaborations suggests active engagement with both the molecular biology and cancer research communities.

Best Publications

  • Landscape of transcription in human cells

    Sarah Djebali;Carrie A. Davis;Angelika Merkel;Alex Dobin

  • The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.

    Thomas Derrien;Rory Johnson;Giovanni Bussotti;Andrea Tanzer

  • Pan-cancer analysis of whole genomes

    Peter J. Campbell;Gad Getz;Jan O. Korbel;Joshua M. Stuart

  • An integrated encyclopedia of DNA elements in the human genome

    Ian Dunham;Anshul Kundaje;Shelley F. Aldred;Patrick J. Collins

  • GENCODE reference annotation for the human and mouse genomes.

    Adam Frankish;Mark Diekhans;Anne-Maud Ferreira;Rory Baldwin Johnson

  • The human transcriptome across tissues and individuals

    Marta Melé;Pedro G. Ferreira;Ferran Reverter;Ferran Reverter;David S. DeLuca

  • Gencode 2021

    A. Frankish;M. Diekhans;I. Jungreis;J. Lagarde

  • Patterns of somatic structural variation in human cancer genomes

    Yilong Li;Nicola D Roberts;Jeremiah A Wala;Jeremiah A Wala;Ofer Shapira;Ofer Shapira

  • Human long non-coding RNAs promote pluripotency and neuronal differentiation by association with chromatin modifiers and transcription factors.

    Shi-Yan Ng;Rory Johnson;Lawrence W Stanton;Lawrence W Stanton

  • Towards a complete map of the human long non-coding RNA transcriptome

    Barbara Uszczynska-Ratajczak;Julien Lagarde;Adam Frankish;Roderic Guigó

  • Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs

    Hagen Tilgner;David G. Knowles;Rory Johnson;Carrie A. Davis

  • A microRNA-based gene dysregulation pathway in Huntington's disease.

    Rory Johnson;Chiara Zuccato;Nikolai D. Belyaev;Deborah J. Guest

  • Long non-coding RNAs in Huntington's disease neurodegeneration.

    Rory Johnson

  • Genome-wide computational identification and manual annotation of human long noncoding RNA genes.

    Hui Jia;Maureen Osak;Gireesh K. Bogu;Lawrence W. Stanton

  • The RIDL hypothesis: transposable elements as functional domains of long noncoding RNAs

    Rory Johnson;Roderic Guigó

  • Genome-wide profiling of the cardiac transcriptome after myocardial infarction identifies novel heart-specific long non-coding RNAs

    Samir Ounzain;Rudi Micheletti;Tal Beckmann;Blanche Schroen

  • LncATLAS database for subcellular localization of long noncoding RNAs.

    David Mas-Ponte;Joana Carlevaro-Fita;Emilio Palumbo;Toni Hermoso Pulido

  • CARMEN, a human super enhancer-associated long noncoding RNA controlling cardiac specification, differentiation and homeostasis

    Samir Ounzain;Rudi Micheletti;Carme Arnan;Isabelle Plaisance

  • MacroRNA underdogs in a microRNA world: evolutionary, regulatory, and biomedical significance of mammalian long non-protein-coding RNA.

    Leonard Lipovich;Rory Johnson;Chin Yo Lin

  • Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia

    Pedro G. Ferreira;Pedro Jares;Daniel Rico;Gonzalo Gómez-López

Frequent Co-Authors

Roderic Guigó
Roderic Guigó Pompeu Fabra University
Lawrence W. Stanton
Lawrence W. Stanton Hamad bin Khalifa University
Noel J. Buckley
Noel J. Buckley University of Oxford
Mark Gerstein
Mark Gerstein Yale University
Thomas R. Gingeras
Thomas R. Gingeras Cold Spring Harbor Laboratory
Adam Frankish
Adam Frankish European Bioinformatics Institute
Leonard Lipovich
Leonard Lipovich Wayne State University
Tim Hubbard
Tim Hubbard King's College London
Paul Flicek
Paul Flicek The Jackson Laboratory

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