World's Best Scientists 2026 revealed!

D-Index & Metrics

Genetics

D-Index
72
Citations
22949
World Ranking
2105
National Ranking
955

Research.com Recognitions

  • 2014 - Fellow of the American Association for the Advancement of Science (AAAS)

Overview

B. Franklin Pugh is affiliated with Cornell University in the United States. Their research primarily focuses on biochemistry, genetics, and molecular biology, with a substantial emphasis on molecular biology as a subfield.

The scientist's work spans several specific topics, including:

  • Genomics and Chromatin Dynamics
  • RNA Research and Splicing
  • RNA and protein synthesis mechanisms
  • Fungal and yeast genetics research
  • Scientific Computing and Data Management
  • Gene expression and cancer classification
  • Genomics and Phylogenetic Studies

Frequent coauthors collaborating with B. Franklin Pugh include:

  • William Lai
  • Prashant Kumar Kuntala
  • Chitvan Mittal
  • Shaun Mahony
  • Matthew J. Rossi

Research outputs have been published extensively in several venues, with repeated contributions to:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Nature
  • Genome biology
  • Cell Reports
  • Genome Research

Representative recent papers include:

  • A high-resolution protein architecture of the budding yeast genome, 2021, Nature
  • Phase separation directs ubiquitination of gene-body nucleosomes, 2020, Nature
  • What do Transcription Factors Interact With?, 2021, Journal of Molecular Biology
  • Universal promoter scanning by Pol II during transcription initiation in Saccharomyces cerevisiae, 2020, Genome biology
  • Acute stress drives global repression through two independent RNA polymerase II stalling events in Saccharomyces, 2021, Cell Reports

B. Franklin Pugh has been recognized as a Fellow of the American Association for the Advancement of Science (AAAS) in 2014.

Best Publications

  • Nucleosome positioning and gene regulation: advances through genomics

    Cizhong Jiang;B. Franklin Pugh

  • Mechanism of transcriptional activation by Sp1: evidence for coactivators.

    B.Franklin Pugh;Robert Tjian

  • Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome

    Istvan Albert;Travis N. Mavrich;Lynn P. Tomsho;Ji Qi

  • Identification and Distinct Regulation of Yeast TATA Box-Containing Genes

    Andrew D Basehoar;Sara J Zanton;B.Franklin Pugh

  • Comprehensive Genome-wide Protein-DNA Interactions Detected at Single Nucleotide Resolution

    Ho Sung Rhee;B. Franklin Pugh

  • Nucleosome organization in the Drosophila genome

    Travis N. Mavrich;Cizhong Jiang;Ilya P. Ioshikhes;Xiaoyong Li

  • A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome

    Travis N. Mavrich;Ilya P. Ioshikhes;Bryan J. Venters;Cizhong Jiang

  • A Genome-Wide Housekeeping Role for TFIID and a Highly Regulated Stress-Related Role for SAGA in Saccharomyces cerevisiae

    Kathryn L. Huisinga;B. Franklin Pugh

  • Genome-wide structure and organization of eukaryotic pre-initiation complexes

    Ho Sung Rhee;B. Franklin Pugh

  • Functional domains and upstream activation properties of cloned human TATA binding protein

    MG Peterson;N Tanese;BF Pugh;R Tjian

  • Complete Khoisan and Bantu genomes from southern Africa

    Stephan C. Schuster;Webb Miller;Aakrosh Ratan;Lynn P. Tomsho

  • Coactivators for a proline-rich activator purified from the multisubunit human TFIID complex.

    N Tanese;B F Pugh;R Tjian

  • Understanding nucleosome dynamics and their links to gene expression and DNA replication.

    William K. M. Lai;B. Franklin Pugh

  • The Pioneer Transcription Factor FoxA Maintains an Accessible Nucleosome Configuration at Enhancers for Tissue-Specific Gene Activation.

    Makiko Iwafuchi-Doi;Greg Donahue;Akshay Kakumanu;Jason A. Watts

  • A packing mechanism for nucleosome organization reconstituted across a eukaryotic genome

    Zhenhai Zhang;Christian J. Wippo;Megha Wal;Elissa Ward

  • Nucleosome positions predicted through comparative genomics.

    Ilya P Ioshikhes;Istvan Albert;Sara J Zanton;B Franklin Pugh

  • Genome-wide nucleosome specificity and directionality of chromatin remodelers.

    Kuangyu Yen;Vinesh Vinayachandran;Kiran Batta;R. Thomas Koerber

  • A comprehensive genomic binding map of gene and chromatin regulatory proteins in Saccharomyces.

    Bryan J. Venters;Shinichiro Wachi;Travis N. Mavrich;Barbara E. Andersen

  • A Genome-wide Map of CTCF Multivalency Redefines the CTCF Code

    Hirotaka Nakahashi;Kyong Rim Kieffer Kwon;Wolfgang Resch;Laura Vian

  • A compiled and systematic reference map of nucleosome positions across the Saccharomyces cerevisiae genome

    Cizhong Jiang;Cizhong Jiang;B Franklin Pugh

Frequent Co-Authors

Cizhong Jiang
Cizhong Jiang Tongji University
Stephan C. Schuster
Stephan C. Schuster Nanyang Technological University
Yanming Wang
Yanming Wang Shanghai Jiao Tong University
Ross C. Hardison
Ross C. Hardison Pennsylvania State University
Can Alkan
Can Alkan Bilkent University
Michael B. Eisen
Michael B. Eisen University of California, Berkeley
Webb Miller
Webb Miller Pennsylvania State University
Nick Patterson
Nick Patterson Harvard University
Elaine R. Mardis
Elaine R. Mardis The Ohio State University
Donna M. Muzny
Donna M. Muzny Baylor College of Medicine

If you think any of the details on this page are incorrect, let us know.

Report an issue

We appreciate your kind effort to assist us to improve this page, it would be helpful providing us with as much detail as possible in the text box below:

Related Online Degrees & Career Pathways

Studying genetics opens up a wide range of rewarding career paths, especially in the healthcare sector. Many students interested in genetics also explore related fields that focus on patient care, research, or advanced medical practice. Online education makes it easier than ever to gain the credentials needed for these careers while balancing other commitments.

For those considering roles that blend genetics with clinical practice, online np programs offer a path to becoming a Nurse Practitioner with a flexible learning schedule. Entry-level professionals can look into online nursing degree programs to start a career in nursing while gaining a foundation in biological sciences, including genetics.

Advanced practitioners may seek leadership roles through the most affordable dnp programs, equipping them to take on top positions in healthcare settings. Nurses aiming to advance their qualifications affordably can explore the cheapest rn to bsn options for further education and career growth.

These online programs not only provide career flexibility and advancement but may also integrate aspects of genetics, preparing graduates for specialized roles in genetics-based healthcare and research.

Best Scientists Citing B. Franklin Pugh

Trending Scientists

Recently Published Articles