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Ecology and Evolution

D-Index
51
Citations
16602
World Ranking
3552
National Ranking
1244

Overview

Ashley Shade is affiliated with Michigan State University in the United States and has a research focus spanning multiple fields within the life sciences. Their work primarily addresses Agricultural and Biological Sciences, Environmental Science, and Biochemistry, Genetics and Molecular Biology. Key subfields of study include Plant Science, Molecular Biology, Ecology, Biomedical Engineering, and Agronomy and Crop Science.

The scientist has contributed extensively to topics such as Microbial Community Ecology and Physiology, Gut microbiota and health, Plant-Microbe Interactions and Immunity, Legume Nitrogen Fixing Symbiosis, Nematode management and characterization studies, Genomics and Phylogenetic Studies, and Biofuel production and bioconversion.

Recent publications by Ashley Shade showcase a focus on microbial and ecological dynamics. Notable papers include:

  • Expansion of the global RNA virome reveals diverse clades of bacteriophages (2022, Cell)
  • Microbial metabolites in the marine carbon cycle (2022, Nature Microbiology)
  • Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity (2022, Nature Microbiology)
  • Persistent microbiome members in the common bean rhizosphere: an integrated analysis of space, time, and plant genotype (2021, The ISME Journal)
  • Temporal dynamics of bacterial communities during seed development and maturation (2020, FEMS Microbiology Ecology)

Ashley Shade frequently collaborates with several other researchers. The most common coauthors include:

  • Jack A. Gilbert
  • Ira J. Blader
  • Felicia Goodrum
  • Michael J. Imperiale
  • Arturo Casadevall

The scientist's body of work is published predominantly in venues such as bioRxiv (Cold Spring Harbor Laboratory), mSystems, Microbiology Resource Announcements, Phytobiomes Journal, and Microbiology Spectrum, indicating active participation in platforms focused on microbiology and related fields.

Best Publications

  • A communal catalogue reveals Earth’s multiscale microbial diversity

    Luke R. Thompson;Luke R. Thompson;Luke R. Thompson;Jon G. Sanders;Daniel McDonald;Amnon Amir

  • Fundamentals of microbial community resistance and resilience

    Ashley Shade;Hannes Peter;Steven D. Allison;Didier L. Baho

  • Beyond the Venn diagram: the hunt for a core microbiome

    Ashley Shade;Jo Handelsman

  • A genomic catalog of Earth’s microbiomes

    Stephen Nayfach;Simon Roux;Rekha Seshadri;Daniel Udwary

  • Conditionally Rare Taxa Disproportionately Contribute to Temporal Changes in Microbial Diversity

    Ashley Shade;Stuart E. Jones;J. Gregory Caporaso;J. Gregory Caporaso;Jo Handelsman

  • Controls on soil microbial community stability under climate change

    Franciska T. de Vries;Ashley Shade

  • Ecological patterns of seed microbiome diversity, transmission, and assembly.

    Ashley Shade;Marie Agnès Jacques;Matthieu Barret

  • Diversity is the question, not the answer

    Ashley Shade

  • A meta-analysis of changes in bacterial and archaeal communities with time

    Ashley Shade;J Gregory Caporaso;J Gregory Caporaso;Jo Handelsman;Rob Knight;Rob Knight

  • Meeting Report: The Terabase Metagenomics Workshop and the Vision of an Earth Microbiome Project

    Jack A. Gilbert;Jack A. Gilbert;Folker Meyer;Dion Antonopoulos;Pavan Balaji

  • Microbial metabolites in the marine carbon cycle

    Unknown

  • Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations

    Matthew L. Bendall;Sarah L.R. Stevens;Leong Keat Chan;Stephanie Malfatti

  • Assembly and seasonality of core phyllosphere microbiota on perennial biofuel crops.

    Keara L. Grady;Jackson W. Sorensen;Jackson W. Sorensen;Nejc Stopnisek;John Guittar

  • Lake microbial communities are resilient after a whole-ecosystem disturbance

    Ashley Shade;Jordan S Read;Nicholas D Youngblut;Noah Fierer

  • Abundance-occupancy distributions to prioritize plant core microbiome membership.

    Ashley Shade;Nejc Stopnisek

  • Unexpected Diversity during Community Succession in the Apple Flower Microbiome

    Ashley Shade;Patricia S. McManus;Jo Handelsman

  • Interannual dynamics and phenology of bacterial communities in a eutrophic lake

    Ashley Shade;Angela D. Kent;Stuart E. Jones;Ryan J. Newton

  • The microbial ecology of flowers: an emerging frontier in phyllosphere research1

    Kristin Aleklett;Miranda Hart;Ashley Shade

  • The under-ice microbiome of seasonally frozen lakes

    Stefan Bertilsson;Amy Burgin;Cayelan C. Carey;Samuel B. Fey

  • Culturing captures members of the soil rare biosphere.

    Ashley Shade;Clifford S. Hogan;Amy K. Klimowicz;Matthew Linske

  • Resistance, resilience and recovery: Aquatic bacterial dynamics after water column disturbance

    Ashley Shade;Jordan S. Read;David G. Welkie;Timothy K. Kratz

Frequent Co-Authors

Katherine D. McMahon
Katherine D. McMahon University of Wisconsin–Madison
Rob Knight
Rob Knight University of California, San Diego
Jack A. Gilbert
Jack A. Gilbert University of California, San Diego
Jo Handelsman
Jo Handelsman University of Wisconsin–Madison
Stuart E. Jones
Stuart E. Jones University of Notre Dame
Noah Fierer
Noah Fierer University of Colorado Boulder
Jordan S. Read
Jordan S. Read United States Geological Survey
J. Gregory Caporaso
J. Gregory Caporaso Northern Arizona University
Stefan Bertilsson
Stefan Bertilsson Swedish Research Council
Timothy K. Kratz
Timothy K. Kratz University of Wisconsin–Madison

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