Yoshiki Vázquez-Baeza

Best Publications

• Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

  Evan Bolyen;Jai Ram Rideout;Matthew R. Dillon;Nicholas A. Bokulich

  21851
  Citations

• Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.

  Evan Bolyen;Jai Ram Rideout;Matthew R. Dillon;Nicholas A. Bokulich

  4019
  Citations

• The Treatment-Naive Microbiome in New-Onset Crohn’s Disease

  Dirk Gevers;Subra Kugathasan;Lee A. Denson;Yoshiki Vázquez-Baeza

  3536
  Citations

• Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases.

  Jason Lloyd-Price;Jason Lloyd-Price;Cesar Arze;Ashwin N. Ananthakrishnan;Melanie Schirmer;Melanie Schirmer

  2917
  Citations

• A communal catalogue reveals Earth’s multiscale microbial diversity

  Luke R. Thompson;Luke R. Thompson;Luke R. Thompson;Jon G. Sanders;Daniel McDonald;Amnon Amir

  2721
  Citations

• Normalization and microbial differential abundance strategies depend upon data characteristics

  Sophie Weiss;Zhenjiang Zech Xu;Shyamal Peddada;Amnon Amir

  2088
  Citations

• EMPeror: a tool for visualizing high-throughput microbial community data

  Yoshiki Vázquez-Baeza;Meg Pirrung;Antonio Gonzalez;Rob Knight;Rob Knight

  1394
  Citations

• Dynamics of the human gut microbiome in inflammatory bowel disease.

  Jonas Halfvarson;Colin J. Brislawn;Regina Lamendella;Yoshiki Vázquez-Baeza

  1264
  Citations

• Longitudinal analysis of microbial interaction between humans and the indoor environment.

  Simon Lax;Simon Lax;Daniel P. Smith;Daniel P. Smith;Daniel P. Smith;Jarrad Hampton-Marcell;Jarrad Hampton-Marcell;Sarah M. Owens;Sarah M. Owens

  1002
  Citations

• QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

  Evan Bolyen;Jai Ram Rideout;Matthew R Dillon;Nicholas A Bokulich

  992
  Citations

• American Gut: an Open Platform for Citizen Science Microbiome Research.

  Daniel McDonald;Embriette Hyde;Justine W. Debelius;James T. Morton

  855
  Citations

• Advancing our understanding of the human microbiome using QIIME

  José A. Navas-Molina;Juan M. Peralta-Sánchez;Antonio González;Paul J. McMurdie

  651
  Citations

• Qiita: rapid, web-enabled microbiome meta-analysis.

  Antonio Gonzalez;Jose A. Navas-Molina;Jose A. Navas-Molina;Tomasz Kosciolek;Daniel McDonald

  645
  Citations

• Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort

  Unknown

  519
  Citations

• QIIME 2 Enables Comprehensive End-to-End Analysis of Diverse Microbiome Data and Comparative Studies with Publicly Available Data.

  Mehrbod Estaki;Lingjing Jiang;Nicholas A. Bokulich;Daniel McDonald

  510
  Citations

• Meta-analyses of studies of the human microbiota

  Catherine A. Lozupone;Jesse Stombaugh;Antonio Gonzalez;Gail Ackermann

  504
  Citations

• Temporal variability is a personalized feature of the human microbiome

  Gilberto E. Flores;J. Gregory Caporaso;Jessica B. Henley;Jai Ram Rideout;Jai Ram Rideout

  486
  Citations

• Multi-omics analyses of the Ulcerative Colitis gut microbiome link Bacteroides vulgatus proteases with disease severity

  Unknown

  451
  Citations

• Gut microbiome of multiple sclerosis patients and paired household healthy controls reveal associations with disease risk and course

  Unknown

  345
  Citations

• Microbiome 101: Studying, Analyzing, and Interpreting Gut Microbiome Data for Clinicians.

  Celeste Allaband;Daniel McDonald;Yoshiki Vázquez-Baeza;Jeremiah J. Minich

  322
  Citations