World's Best Scientists 2026 revealed!

D-Index & Metrics

Microbiology

D-Index
53
Citations
53196
World Ranking
4028
National Ranking
1563

Best Publications

  • Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

    Evan Bolyen;Jai Ram Rideout;Matthew R. Dillon;Nicholas A. Bokulich

  • Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.

    Evan Bolyen;Jai Ram Rideout;Matthew R. Dillon;Nicholas A. Bokulich

  • The Treatment-Naive Microbiome in New-Onset Crohn’s Disease

    Dirk Gevers;Subra Kugathasan;Lee A. Denson;Yoshiki Vázquez-Baeza

  • Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases.

    Jason Lloyd-Price;Jason Lloyd-Price;Cesar Arze;Ashwin N. Ananthakrishnan;Melanie Schirmer;Melanie Schirmer

  • A communal catalogue reveals Earth’s multiscale microbial diversity

    Luke R. Thompson;Luke R. Thompson;Luke R. Thompson;Jon G. Sanders;Daniel McDonald;Amnon Amir

  • Normalization and microbial differential abundance strategies depend upon data characteristics

    Sophie Weiss;Zhenjiang Zech Xu;Shyamal Peddada;Amnon Amir

  • EMPeror: a tool for visualizing high-throughput microbial community data

    Yoshiki Vázquez-Baeza;Meg Pirrung;Antonio Gonzalez;Rob Knight;Rob Knight

  • Dynamics of the human gut microbiome in inflammatory bowel disease.

    Jonas Halfvarson;Colin J. Brislawn;Regina Lamendella;Yoshiki Vázquez-Baeza

  • Longitudinal analysis of microbial interaction between humans and the indoor environment.

    Simon Lax;Simon Lax;Daniel P. Smith;Daniel P. Smith;Daniel P. Smith;Jarrad Hampton-Marcell;Jarrad Hampton-Marcell;Sarah M. Owens;Sarah M. Owens

  • QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

    Evan Bolyen;Jai Ram Rideout;Matthew R Dillon;Nicholas A Bokulich

  • American Gut: an Open Platform for Citizen Science Microbiome Research.

    Daniel McDonald;Embriette Hyde;Justine W. Debelius;James T. Morton

  • Advancing our understanding of the human microbiome using QIIME

    José A. Navas-Molina;Juan M. Peralta-Sánchez;Antonio González;Paul J. McMurdie

  • Qiita: rapid, web-enabled microbiome meta-analysis.

    Antonio Gonzalez;Jose A. Navas-Molina;Jose A. Navas-Molina;Tomasz Kosciolek;Daniel McDonald

  • Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort

    Unknown

  • QIIME 2 Enables Comprehensive End-to-End Analysis of Diverse Microbiome Data and Comparative Studies with Publicly Available Data.

    Mehrbod Estaki;Lingjing Jiang;Nicholas A. Bokulich;Daniel McDonald

  • Meta-analyses of studies of the human microbiota

    Catherine A. Lozupone;Jesse Stombaugh;Antonio Gonzalez;Gail Ackermann

  • Temporal variability is a personalized feature of the human microbiome

    Gilberto E. Flores;J. Gregory Caporaso;Jessica B. Henley;Jai Ram Rideout;Jai Ram Rideout

  • Multi-omics analyses of the Ulcerative Colitis gut microbiome link Bacteroides vulgatus proteases with disease severity

    Unknown

  • Gut microbiome of multiple sclerosis patients and paired household healthy controls reveal associations with disease risk and course

    Unknown

  • Microbiome 101: Studying, Analyzing, and Interpreting Gut Microbiome Data for Clinicians.

    Celeste Allaband;Daniel McDonald;Yoshiki Vázquez-Baeza;Jeremiah J. Minich

Frequent Co-Authors

Rob Knight
Rob Knight University of California, San Diego
Pieter C. Dorrestein
Pieter C. Dorrestein University of California, San Diego
Se Jin Song
Se Jin Song University of California, San Diego
Shi Huang
Shi Huang University of California, San Diego
Ho-Cheol Kim
Ho-Cheol Kim IBM (United States)
Curtis Huttenhower
Curtis Huttenhower Harvard University
Michael Inouye
Michael Inouye Baker IDI Heart and Diabetes Institute
Jack A. Gilbert
Jack A. Gilbert University of California, San Diego
J. Gregory Caporaso
J. Gregory Caporaso Northern Arizona University
Dan Knights
Dan Knights University of Minnesota

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Best Scientists Citing Yoshiki Vázquez-Baeza

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