Se Jin Song

Best Publications

• Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

  Evan Bolyen;Jai Ram Rideout;Matthew R. Dillon;Nicholas A. Bokulich

  21851
  Citations

• Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.

  Evan Bolyen;Jai Ram Rideout;Matthew R. Dillon;Nicholas A. Bokulich

  4019
  Citations

• The Treatment-Naive Microbiome in New-Onset Crohn’s Disease

  Dirk Gevers;Subra Kugathasan;Lee A. Denson;Yoshiki Vázquez-Baeza

  3536
  Citations

• A communal catalogue reveals Earth’s multiscale microbial diversity

  Luke R. Thompson;Luke R. Thompson;Luke R. Thompson;Jon G. Sanders;Daniel McDonald;Amnon Amir

  2721
  Citations

• Cohabiting family members share microbiota with one another and with their dogs

  Se Jin Song;Christian Lauber;Elizabeth K Costello;Catherine A Lozupone

  1254
  Citations

• Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer

  Maria G Dominguez-Bello;Maria G Dominguez-Bello;Kassandra M De Jesus-Laboy;Nan Shen;Laura M Cox

  1088
  Citations

• Microbiome analyses of blood and tissues suggest cancer diagnostic approach

  Gregory D. Poore;Evguenia Kopylova;Qiyun Zhu;Carolina Carpenter

  1013
  Citations

• QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

  Evan Bolyen;Jai Ram Rideout;Matthew R Dillon;Nicholas A Bokulich

  992
  Citations

• The microbiome of uncontacted Amerindians

  Jose C. Clemente;Erica C. Pehrsson;Martin J. Blaser;Martin J. Blaser;Kuldip Sandhu

  940
  Citations

• American Gut: an Open Platform for Citizen Science Microbiome Research.

  Daniel McDonald;Embriette Hyde;Justine W. Debelius;James T. Morton

  855
  Citations

• Advancing our understanding of the human microbiome using QIIME

  José A. Navas-Molina;Juan M. Peralta-Sánchez;Antonio González;Paul J. McMurdie

  651
  Citations

• Microbial community assembly and metabolic function during mammalian corpse decomposition

  Jessica L. Metcalf;Jessica L. Metcalf;Zhenjiang Zech Xu;Sophie Weiss;Simon Lax

  544
  Citations

• Greengenes2 unifies microbial data in a single reference tree.

  Unknown

  533
  Citations

• Preservation Methods Differ in Fecal Microbiome Stability, Affecting Suitability for Field Studies.

  Se Jin Song;Amnon Amir;Jessica L. Metcalf;Jessica L. Metcalf;Katherine R. Amato

  455
  Citations

• The Effects of Captivity on the Mammalian Gut Microbiome.

  Valerie J. McKenzie;Se Jin Song;Se Jin Song;Frédéric Delsuc;Tiffany L. Prest

  436
  Citations

• Comparative Analyses of Vertebrate Gut Microbiomes Reveal Convergence between Birds and Bats

  Se Jin Song;Jon G. Sanders;Frédéric Delsuc;Jessica Metcalf

  430
  Citations

• The human microbiome in evolution.

  Emily R. Davenport;Jon G. Sanders;Se Jin Song;Katherine R. Amato

  400
  Citations

• Convergence of gut microbiomes in myrmecophagous mammals.

  Frédéric Delsuc;Frédéric Delsuc;Jessica L. Metcalf;Laura Wegener Parfrey;Se Jin Song

  370
  Citations

• Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes.

  Katherine R. Amato;Jon G. Sanders;Se Jin Song;Michael Nute

  341
  Citations

• The Bee Microbiome: Impact on Bee Health and Model for Evolution and Ecology of Host-Microbe Interactions.

  Philipp Engel;Waldan K. Kwong;Waldan K. Kwong;Quinn McFrederick;Kirk E. Anderson

  319
  Citations