Nicholas A. Bokulich

Nicholas A. Bokulich publication distribution in Microbiology in 2026

The chart shows the distribution of publications by all Research.com ranked scientists in the field of Microbiology in 2026. The highlighted bar marks where Nicholas A. Bokulich sits on this spectrum.

Nicholas A. Bokulich D-index placement in Microbiology in 2026

The chart shows the D-index (discipline H-index) distribution of Microbiology scientists ranked by Research.com in 2026. The highlighted bar marks where Nicholas A. Bokulich sits on this spectrum.

Best Publications

• Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

  Evan Bolyen;Jai Ram Rideout;Matthew R. Dillon;Nicholas A. Bokulich

  21851
  Citations

• Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

  Nicholas A. Bokulich;Benjamin D. Kaehler;Jai Ram Rideout;Matthew Dillon

  5638
  Citations

• Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing.

  Nicholas A Bokulich;Sathish Subramanian;Jeremiah J Faith;Dirk Gevers

  4476
  Citations

• Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.

  Evan Bolyen;Jai Ram Rideout;Matthew R. Dillon;Nicholas A. Bokulich

  4019
  Citations

• A communal catalogue reveals Earth’s multiscale microbial diversity

  Luke R. Thompson;Luke R. Thompson;Luke R. Thompson;Jon G. Sanders;Daniel McDonald;Amnon Amir

  2721
  Citations

• Antibiotics, birth mode, and diet shape microbiome maturation during early life

  Nicholas A. Bokulich;Jennifer Chung;Thomas Battaglia;Nora Henderson

  1521
  Citations

• Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer

  Maria G Dominguez-Bello;Maria G Dominguez-Bello;Kassandra M De Jesus-Laboy;Nan Shen;Laura M Cox

  1088
  Citations

• Microbial biogeography of wine grapes is conditioned by cultivar, vintage, and climate

  Nicholas A. Bokulich;John H. Thorngate;Paul M. Richardson;David A. Mills

  1056
  Citations

• QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

  Evan Bolyen;Jai Ram Rideout;Matthew R Dillon;Nicholas A Bokulich

  992
  Citations

• The Soil Microbiome Influences Grapevine-Associated Microbiota

  Iratxe Zarraonaindia;Iratxe Zarraonaindia;Sarah M. Owens;Sarah M. Owens;Pamela Weisenhorn;Kristin West

  931
  Citations

• Improved Selection of Internal Transcribed Spacer-Specific Primers Enables Quantitative, Ultra-High-Throughput Profiling of Fungal Communities

  Nicholas A. Bokulich;David A. Mills

  592
  Citations

• QIIME 2 Enables Comprehensive End-to-End Analysis of Diverse Microbiome Data and Comparative Studies with Publicly Available Data.

  Mehrbod Estaki;Lingjing Jiang;Nicholas A. Bokulich;Daniel McDonald

  510
  Citations

• Associations among Wine Grape Microbiome, Metabolome, and Fermentation Behavior Suggest Microbial Contribution to Regional Wine Characteristics

  Nicholas A. Bokulich;Thomas S. Collins;Chad Masarweh;Greg Allen

  444
  Citations

• The Microbiology of Malting and Brewing

  Unknown

  412
  Citations

• Metabolic and metagenomic outcomes from early-life pulsed antibiotic treatment

  Yael R. Nobel;Laura M. Cox;Francis F. Kirigin;Nicholas A. Bokulich

  402
  Citations

• Facility-Specific House Microbiome Drives Microbial Landscapes of Artisan Cheesemaking Plants

  Nicholas A. Bokulich;David A. Mills

  320
  Citations

• q2-longitudinal: Longitudinal and Paired-Sample Analyses of Microbiome Data.

  Nicholas A. Bokulich;Matthew R. Dillon;Yilong Zhang;Jai Ram Rideout

  298
  Citations

• Learning representations of microbe–metabolite interactions

  James T. Morton;Alexander A. Aksenov;Alexander A. Aksenov;Louis Felix Nothias;Louis Felix Nothias;James R. Foulds

  297
  Citations

• q2-sample-classifier: machine-learning tools for microbiome classification and regression.

  Nicholas A. Bokulich;Matthew R Dillon;Evan Bolyen;Benjamin D Kaehler

  243
  Citations

• Brewhouse-resident microbiota are responsible for multi-stage fermentation of American coolship ale.

  Nicholas A. Bokulich;Charles W. Bamforth;David A. Mills

  240
  Citations