World's Best Scientists 2026 revealed!
Nicholas A. Bokulich

Nicholas A. Bokulich

D-Index & Metrics

Microbiology

D-Index
44
Citations
52934
World Ranking
5067
National Ranking
123

Best Publications

  • Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

    Evan Bolyen;Jai Ram Rideout;Matthew R. Dillon;Nicholas A. Bokulich

  • Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

    Nicholas A. Bokulich;Benjamin D. Kaehler;Jai Ram Rideout;Matthew Dillon

  • Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing.

    Nicholas A Bokulich;Sathish Subramanian;Jeremiah J Faith;Dirk Gevers

  • Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.

    Evan Bolyen;Jai Ram Rideout;Matthew R. Dillon;Nicholas A. Bokulich

  • A communal catalogue reveals Earth’s multiscale microbial diversity

    Luke R. Thompson;Luke R. Thompson;Luke R. Thompson;Jon G. Sanders;Daniel McDonald;Amnon Amir

  • Antibiotics, birth mode, and diet shape microbiome maturation during early life

    Nicholas A. Bokulich;Jennifer Chung;Thomas Battaglia;Nora Henderson

  • Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer

    Maria G Dominguez-Bello;Maria G Dominguez-Bello;Kassandra M De Jesus-Laboy;Nan Shen;Laura M Cox

  • Microbial biogeography of wine grapes is conditioned by cultivar, vintage, and climate

    Nicholas A. Bokulich;John H. Thorngate;Paul M. Richardson;David A. Mills

  • QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

    Evan Bolyen;Jai Ram Rideout;Matthew R Dillon;Nicholas A Bokulich

  • The Soil Microbiome Influences Grapevine-Associated Microbiota

    Iratxe Zarraonaindia;Iratxe Zarraonaindia;Sarah M. Owens;Sarah M. Owens;Pamela Weisenhorn;Kristin West

  • Improved Selection of Internal Transcribed Spacer-Specific Primers Enables Quantitative, Ultra-High-Throughput Profiling of Fungal Communities

    Nicholas A. Bokulich;David A. Mills

  • QIIME 2 Enables Comprehensive End-to-End Analysis of Diverse Microbiome Data and Comparative Studies with Publicly Available Data.

    Mehrbod Estaki;Lingjing Jiang;Nicholas A. Bokulich;Daniel McDonald

  • Associations among Wine Grape Microbiome, Metabolome, and Fermentation Behavior Suggest Microbial Contribution to Regional Wine Characteristics

    Nicholas A. Bokulich;Thomas S. Collins;Chad Masarweh;Greg Allen

  • The Microbiology of Malting and Brewing

    Unknown

  • Metabolic and metagenomic outcomes from early-life pulsed antibiotic treatment

    Yael R. Nobel;Laura M. Cox;Francis F. Kirigin;Nicholas A. Bokulich

  • Facility-Specific House Microbiome Drives Microbial Landscapes of Artisan Cheesemaking Plants

    Nicholas A. Bokulich;David A. Mills

  • q2-longitudinal: Longitudinal and Paired-Sample Analyses of Microbiome Data.

    Nicholas A. Bokulich;Matthew R. Dillon;Yilong Zhang;Jai Ram Rideout

  • Learning representations of microbe–metabolite interactions

    James T. Morton;Alexander A. Aksenov;Alexander A. Aksenov;Louis Felix Nothias;Louis Felix Nothias;James R. Foulds

  • q2-sample-classifier: machine-learning tools for microbiome classification and regression.

    Nicholas A. Bokulich;Matthew R Dillon;Evan Bolyen;Benjamin D Kaehler

  • Brewhouse-resident microbiota are responsible for multi-stage fermentation of American coolship ale.

    Nicholas A. Bokulich;Charles W. Bamforth;David A. Mills

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