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Biology and Biochemistry

D-Index
56
Citations
30432
World Ranking
14132
National Ranking
5958

Overview

Allon M. Klein is affiliated with Harvard University in the United States. Their research primarily spans across the fields of Biochemistry, Genetics and Molecular Biology, with a total of 58 publications. Within this broad area, their subfields of study include Molecular Biology, Immunology, Oncology, Biomedical Engineering, and Cancer Research.

The research topics covered by Allon M. Klein emphasize advanced methodologies and applications such as Single-cell and spatial transcriptomics, Gene Regulatory Network Analysis, Immune cells in cancer, Cell Image Analysis Techniques, Cancer Genomics and Diagnostics, Epigenetics and DNA Methylation, and Cancer Cells and Metastasis.

Their recent publications highlight significant contributions to understanding cellular and molecular processes. Notable papers include:

  • "Lineage tracing on transcriptional landscapes links state to fate during differentiation" (2020) published in Science
  • "Lineage tracing meets single-cell omics: opportunities and challenges" (2020) published in Nature Reviews Genetics
  • "The emergence of transcriptional identity in somatosensory neurons" (2020) published in Nature
  • "CXCL9:SPP1 macrophage polarity identifies a network of cellular programs that control human cancers" (2023) published in Science
  • "A neutrophil response linked to tumor control in immunotherapy" (2023) published in Cell

Frequent co-authors working with Allon M. Klein include Sean G. Megason, Kalki Kukreja, Marius Messemaker, Mikaël J. Pittet, and Nicolas A. Gort-Freitas. These collaborations are featured repeatedly across multiple publications.

The venues where Allon M. Klein's work is commonly published demonstrate a focus on leading journals in the life sciences and biomedical research. These frequent publication venues include:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Nature
  • Science
  • Cell
  • Cell Systems

Best Publications

  • Droplet Barcoding for Single-Cell Transcriptomics Applied to Embryonic Stem Cells

    Allon M. Klein;Linas Mazutis;Linas Mazutis;Ilke Akartuna;Naren Tallapragada

  • Intestinal crypt homeostasis results from neutral competition between symmetrically dividing Lgr5 stem cells

    Hugo J. Snippert;Laurens G. van der Flier;Toshiro Sato;Johan H. van Es

  • Scrublet: Computational Identification of Cell Doublets in Single-Cell Transcriptomic Data.

    Samuel L. Wolock;Romain Lopez;Romain Lopez;Allon M. Klein

  • Single-Cell Transcriptomics of Human and Mouse Lung Cancers Reveals Conserved Myeloid Populations across Individuals and Species.

    Rapolas Zilionis;Rapolas Zilionis;Camilla Engblom;Christina Pfirschke;Virginia Savova

  • A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell Population Structure.

    Maayan Baron;Adrian Veres;Samuel L. Wolock;Aubrey L. Faust

  • A single type of progenitor cell maintains normal epidermis

    Elizabeth Clayton;David P. Doupé;Allon M. Klein;Douglas J. Winton

  • A single-cell atlas of the airway epithelium reveals the CFTR-rich pulmonary ionocyte

    Lindsey W. Plasschaert;Rapolas Žilionis;Rapolas Žilionis;Rayman Choo-Wing;Virginia Savova

  • Clonal dynamics of native haematopoiesis

    Jianlong Sun;Azucena Ramos;Brad Chapman;Jonathan B. Johnnidis

  • Single-cell mapping of gene expression landscapes and lineage in the zebrafish embryo

    Daniel E. Wagner;Caleb Weinreb;Zach M. Collins;James A. Briggs

  • Single-cell barcoding and sequencing using droplet microfluidics

    Rapolas Zilionis;Rapolas Zilionis;Juozas Nainys;Adrian Veres;Virginia Savova

  • Intestinal Stem Cell Replacement Follows a Pattern of Neutral Drift

    Carlos Lopez-Garcia;Allon M. Klein;Benjamin D. Simons;Douglas J. Winton

  • The dynamics of gene expression in vertebrate embryogenesis at single-cell resolution

    James A. Briggs;Caleb Weinreb;Daniel E. Wagner;Sean Megason

  • Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain.

    Bushra Raj;Daniel E Wagner;Aaron McKenna;Shristi Pandey

  • Lineage tracing on transcriptional landscapes links state to fate during differentiation

    Caleb Weinreb;Alejo Rodriguez-Fraticelli;Alejo Rodriguez-Fraticelli;Fernando D. Camargo;Fernando D. Camargo;Allon M. Klein

  • Single-cell analysis of experience-dependent transcriptomic states in the mouse visual cortex.

    Sinisa Hrvatin;Daniel R. Hochbaum;Daniel R. Hochbaum;M. Aurel Nagy;Marcelo Cicconet

  • Clonal analysis of lineage fate in native haematopoiesis

    Alejo E. Rodriguez-Fraticelli;Samuel L. Wolock;Caleb S. Weinreb;Riccardo Panero

  • Lineage tracing meets single-cell omics: opportunities and challenges.

    Daniel E. Wagner;Allon M. Klein

  • Interfollicular Epidermal Stem Cells Self-Renew via Autocrine Wnt Signaling

    Xinhong Lim;Si Hui Tan;Winston Lian Chye Koh;Rosanna Man Wah Chau

  • Universal patterns of stem cell fate in cycling adult tissues.

    Allon M. Klein;Allon M. Klein;Benjamin D. Simons

  • Single-cell gene expression reveals a landscape of regulatory T cell phenotypes shaped by the TCR.

    David Zemmour;Rapolas Zilionis;Rapolas Zilionis;Evgeny Kiner;Allon M. Klein

Frequent Co-Authors

Benjamin D. Simons
Benjamin D. Simons University of Cambridge
Fernando D. Camargo
Fernando D. Camargo Harvard University
Mikael J. Pittet
Mikael J. Pittet University of Geneva
Marc W. Kirschner
Marc W. Kirschner Harvard University
Daniel G. Tenen
Daniel G. Tenen National University of Singapore
Ralph Weissleder
Ralph Weissleder Harvard University
Clifford J. Woolf
Clifford J. Woolf Boston Children's Hospital
Jay Shendure
Jay Shendure University of Washington
Victor C. Li
Victor C. Li University of Michigan–Ann Arbor
David A. Weitz
David A. Weitz Harvard University

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