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Biology and Biochemistry

D-Index
55
Citations
11784
World Ranking
14982
National Ranking
6267

Overview

Robert J. Chalkley is a researcher affiliated with the University of California, San Francisco, in the United States.

The scientist's recent publications include the following:

  • Community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysis, 2021, Nature Methods
  • Toward Increased Reliability, Transparency, and Accessibility in Cross-linking Mass Spectrometry, 2020, Structure
  • Methods for Enrichment and Assignment of N-Acetylglucosamine Modification Sites, 2020, Molecular & Cellular Proteomics
  • Proteomic analysis of platelet-rich and platelet-poor plasma, 2020, Regenerative Therapy
  • SPINDLY mediates O-fucosylation of hundreds of proteins and sugar-dependent growth in Arabidopsis, 2023, The Plant Cell

Some of the frequent co-authors working with Robert J. Chalkley include:

  • Alma L. Burlingame
  • Peter R. Baker
  • Ruben Shrestha
  • Andres V Reyes
  • Shou-Ling Xu

Publications by this scientist have frequently appeared in the following venues:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Molecular & Cellular Proteomics
  • Nature Methods
  • Frontiers in Plant Science
  • Nature Cell Biology

The main fields of study represented in Robert J. Chalkley's work include:

  • Biochemistry, Genetics and Molecular Biology
  • Chemistry

Subfields where the scientist has contributed are:

  • Molecular Biology
  • Spectroscopy
  • Ecology
  • Organic Chemistry
  • Plant Science

The research topics covered by Robert J. Chalkley's publications include:

  • Advanced Proteomics Techniques and Applications
  • Glycosylation and Glycoproteins Research
  • Mass Spectrometry Techniques and Applications
  • Genomics and Phylogenetic Studies
  • RNA and protein synthesis mechanisms
  • Metabolomics and Mass Spectrometry Studies
  • Isotope Analysis in Ecology

Best Publications

  • ProteomeXchange provides globally coordinated proteomics data submission and dissemination

    Juan A. Vizcaíno;Eric W Deutsch;Rui Wang;Attila Csordas

  • O-Linked N-Acetylglucosamine Proteomics of Postsynaptic Density Preparations Using Lectin Weak Affinity Chromatography and Mass Spectrometry

    Keith Vosseller;Jonathan C. Trinidad;Robert J. Chalkley;Christian G. Specht

  • Mass Spectrometric Analysis of Protein Mixtures at Low Levels Using Cleavable 13C-Isotope-coded Affinity Tag and Multidimensional Chromatography

    Kirk C. Hansen;Gerold Schmitt-Ulms;Robert J. Chalkley;Jan Hirsch

  • Glucose Sensor O-GlcNAcylation Coordinates with Phosphorylation to Regulate Circadian Clock

    Krista Kaasik;Saul Kivimäe;Jasmina Jasmina J Allen;Robert J. Chalkley

  • A Combinatorial Code for the Interaction of α-Synuclein with Membranes

    Shin-ichiro Kubo;Venu M. Nemani;Robert J. Chalkley;Malcolm D. Anthony

  • Identification of protein O-GlcNAcylation sites using electron transfer dissociation mass spectrometry on native peptides

    Robert J. Chalkley;Agnes Thalhammer;Ralf Schoepfer;A. L. Burlingame

  • Comprehensive analysis of a multidimensional liquid chromatography mass spectrometry dataset acquired on a quadrupole selecting, quadrupole collision cell, time-of-flight mass spectrometer: II. New developments in Protein Prospector allow for reliable and comprehensive automatic analysis of large datasets.

    Robert J. Chalkley;Peter R. Baker;Lan Huang;Kirk C. Hansen

  • Lessons in de novo peptide sequencing by tandem mass spectrometry

    Katalin F. Medzihradszky;Robert J. Chalkley

  • In-depth Analysis of Tandem Mass Spectrometry Data from Disparate Instrument Types

    Robert J. Chalkley;Peter R. Baker;Katalin F. Medzihradszky;Aenoch J. Lynn

  • Quantitative analysis of both protein expression and serine / threonine post-translational modifications through stable isotope labeling with dithiothreitol

    Keith Vosseller;Kirk C. Hansen;Robert J. Chalkley;Jonathan C. Trinidad

  • A Proteomics Study of Brassinosteroid Response in Arabidopsis

    Zhiping Deng;Xin Zhang;Wenqiang Tang;Juan A. Oses-Prieto

  • O-Sulfonation of Serine and Threonine Mass Spectrometric Detection and Characterization of a New Posttranslational Modification in Diverse Proteins Throughout the Eukaryotes

    K. F. Medzihradszky;Z. Darula;E. Perlson;M. Fainzilber

  • MS-Viewer: A Web-based Spectral Viewer for Proteomics Results

    Peter R. Baker;Robert J. Chalkley

  • Matching Cross-linked Peptide Spectra: Only as Good as the Worse Identification

    Michael J. Trnka;Peter R. Baker;Philip J.J. Robinson;A.L. Burlingame

  • PPKs mediate direct signal transfer from phytochrome photoreceptors to transcription factor PIF3

    Weimin Ni;Weimin Ni;Shou-Ling Xu;Shou-Ling Xu;Shou-Ling Xu;Eduardo González-Grandío;Eduardo González-Grandío;Robert J. Chalkley

  • The PSI-MOD community standard for representation of protein modification data

    Luisa Montecchi-Palazzi;Ron Beavis;Pierre-Alain Binz;Robert J Chalkley

  • The DegraBase: A Database of Proteolysis in Healthy and Apoptotic Human Cells

    Emily Dawn Crawford;Julia Elizabeth Seaman;Nick Agard;Gerald W. Hsu

  • Modification Site Localization Scoring: Strategies and Performance

    Robert J. Chalkley;Karl R. Clauser

  • Multisite Light-Induced Phosphorylation of the Transcription Factor PIF3 Is Necessary for Both Its Rapid Degradation and Concomitant Negative Feedback Modulation of Photoreceptor phyB Levels in Arabidopsis

    Weimin Ni;Shou-Ling Xu;Shou-Ling Xu;Robert J. Chalkley;Thao Nguyen D. Pham;Thao Nguyen D. Pham

  • Tissue-Specific Glycosylation at the Glycopeptide Level

    Katalin F. Medzihradszky;Krista Kaasik;Robert J. Chalkley

Frequent Co-Authors

Alma L. Burlingame
Alma L. Burlingame University of California, San Francisco
Katalin F. Medzihradszky
Katalin F. Medzihradszky University of California, San Francisco
Ralph A. Bradshaw
Ralph A. Bradshaw University of California, Irvine
Eric W. Deutsch
Eric W. Deutsch University of Washington
Kirk C. Hansen
Kirk C. Hansen University of Colorado Anschutz Medical Campus
Juan Antonio Vizcaíno
Juan Antonio Vizcaíno European Bioinformatics Institute
Zhi-Yong Wang
Zhi-Yong Wang Carnegie Institution for Science
Nicolle H. Packer
Nicolle H. Packer Macquarie University
Karl R. Clauser
Karl R. Clauser Broad Institute
Nuno Bandeira
Nuno Bandeira University of California, San Diego

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