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Genetics

D-Index
54
Citations
11868
World Ranking
3633
National Ranking
1577

Research.com Recognitions

  • 2013 - Fellow of Alfred P. Sloan Foundation

Overview

Remo Rohs is affiliated with the University of Southern California in the United States. Their research primarily spans the field of Biochemistry, Genetics and Molecular Biology, with a focus on Molecular Biology, Plant Science, Genetics, Computational Theory and Mathematics, and Public Health, Environmental and Occupational Health as subfields of study.

The main topics explored in their work include:

  • Genomics and Chromatin Dynamics
  • RNA and protein synthesis mechanisms
  • Protein Structure and Dynamics
  • Chromosomal and Genetic Variations
  • Computational Drug Discovery Methods
  • RNA modifications and cancer
  • RNA Research and Splicing

Among their recent publications are:

  • "Predicting DNA structure using a deep learning method," 2024, Nature Communications
  • "Genome information processing by the INO80 chromatin remodeler positions nucleosomes," 2021, Nature Communications
  • "Humanizing the yeast origin recognition complex," 2021, Nature Communications
  • "Geometric deep learning of protein-DNA binding specificity," 2024, Nature Methods
  • "Epigenetic competition reveals density-dependent regulation and target site plasticity of phosphorothioate epigenetics in bacteria," 2020, Proceedings of the National Academy of Sciences

Frequent co-authors collaborating with Remo Rohs include:

  • Tsu-Pei Chiu
  • Jinsen Li
  • Raktim Mitra
  • Brendon H Cooper
  • Jared M. Sagendorf

The venues where they have published most often are:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Nucleic Acids Research
  • Biophysical Journal
  • Nature Communications
  • Proceedings of the National Academy of Sciences

Remo Rohs was recognized as a Fellow of the Alfred P. Sloan Foundation in 2013.

Best Publications

  • The role of DNA shape in protein–DNA recognition

    Remo Rohs;Sean M. West;Alona Sosinsky;Alona Sosinsky;Peng Liu

  • Origins of Specificity in Protein-DNA Recognition

    Remo Rohs;Xiangshu Jin;Sean M. West;Rohit Joshi

  • Absence of a simple code: how transcription factors read the genome

    Matthew G Slattery;Tianyin Zhou;Lin Yang;Ana Carolina Dantas Machado

  • Cofactor Binding Evokes Latent Differences in DNA Binding Specificity between Hox Proteins

    Matthew G Slattery;Todd Riley;Peng Liu;Peng Liu;Namiko Abe

  • Functional specificity of a Hox protein mediated by the recognition of minor groove structure

    Rohit Joshi;Jonathan M. Passner;Remo Rohs;Remo Rohs;Rinku Jain

  • Genomic regions flanking E-box binding sites influence DNA binding specificity of bHLH transcription factors through DNA shape

    Raluca Gordân;Ning Shen;Iris Dror;Tianyin Zhou

  • DNAshape: a method for the high-throughput prediction of DNA structural features on a genomic scale

    Tianyin Zhou;Lin Yang;Yan Lu;Iris Dror

  • Molecular flexibility in ab initio drug docking to DNA: binding-site and binding-mode transitions in all-atom Monte Carlo simulations.

    Remo Rohs;Itai Bloch;Heinz Sklenar;Zippora Shakked

  • Diversity in DNA recognition by p53 revealed by crystal structures with Hoogsteen base pairs.

    Malka Kitayner;Haim Rozenberg;Remo Rohs;Remo Rohs;Oded Suad

  • Quantitative modeling of transcription factor binding specificities using DNA shape

    Tianyin Zhou;Ning Shen;Lin Yang;Namiko Abe

  • Correction: Corrigendum: ChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo

    Gabriel E. Zentner;Sivakanthan Kasinathan;Beibei Xin;Remo Rohs

  • Coregulation of Transcription Factor Binding and Nucleosome Occupancy through DNA Features of Mammalian Enhancers

    Iros Barozzi;Marta Simonatto;Silvia Bonifacio;Lin Yang

  • Methylene Blue Binding to DNA with Alternating GC Base Sequence: A Modeling Study

    Remo Rohs;Heinz Sklenar;and Richard Lavery;Beate Röder

  • Probing DNA shape and methylation state on a genomic scale with DNase I

    Allan Lazarovici;Tianyin Zhou;Anthony Shafer;Ana Carolina Dantas Machado

  • Deconvolving the recognition of DNA shape from sequence.

    Namiko Abe;Iris Dror;Iris Dror;Lin Yang;Matthew G Slattery

  • ChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo

    Gabriel E. Zentner;Sivakanthan Kasinathan;Sivakanthan Kasinathan;Beibei Xin;Remo Rohs

  • Quantum annealing versus classical machine learning applied to a simplified computational biology problem

    Richard Y. Li;Rosa Di Felice;Remo Rohs;Daniel A. Lidar

  • DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding

    Tsu-Pei Chiu;Federico Comoglio;Tianyin Zhou;Lin Yang

  • Unraveling determinants of transcription factor binding outside the core binding site

    Michal Levo;Einat Zalckvar;Eilon Sharon;Ana Carolina Dantas Machado

  • A widespread role of the motif environment in transcription factor binding across diverse protein families

    Iris Dror;Iris Dror;Tamar Golan;Carmit Levy;Remo Rohs

Frequent Co-Authors

Barry Honig
Barry Honig Columbia University
Richard S. Mann
Richard S. Mann Columbia University
Harmen J. Bussemaker
Harmen J. Bussemaker Columbia University
Lin Chen
Lin Chen University of Chicago
Wyeth W. Wasserman
Wyeth W. Wasserman University of British Columbia
Steven Henikoff
Steven Henikoff Fred Hutchinson Cancer Research Center
Hans A. Kestler
Hans A. Kestler University of Ulm
K. Lenhard Rudolph
K. Lenhard Rudolph National Institutes of Health
Helen M. Berman
Helen M. Berman Rutgers, The State University of New Jersey

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