D-Index & Metrics Best Publications

D-Index & Metrics D-index (Discipline H-index) only includes papers and citation values for an examined discipline in contrast to General H-index which accounts for publications across all disciplines.

Discipline name D-index D-index (Discipline H-index) only includes papers and citation values for an examined discipline in contrast to General H-index which accounts for publications across all disciplines. Citations Publications World Ranking National Ranking
Genetics and Molecular Biology D-index 49 Citations 26,428 71 World Ranking 3915 National Ranking 1846

Research.com Recognitions

Awards & Achievements

2020 - Fellow of the International Society for Computational Biology

2019 - Fellow of the Indian National Academy of Engineering (INAE)

Overview

What is he best known for?

The fields of study he is best known for:

  • Gene
  • Genome
  • DNA

Mark Borodovsky focuses on Gene, Genome, Gene prediction, Genetics and Computational biology. His research investigates the link between Gene and topics such as Algorithm that cross with problems in Expressed sequence tag, Coding and Coding region. His Genome research is multidisciplinary, incorporating perspectives in Regulatory sequence, Bioinformatics and Phylogenetic tree.

His study in Gene prediction is interdisciplinary in nature, drawing from both Prunus, Genomics, DNA sequencing, Fragaria and Hidden Markov model. His Genetics research incorporates elements of Paramecium bursaria and Botany. His Computational biology research includes elements of Sequence alignment, Markov chain, Bacterial genome size, Vertebrate and Genome Annotation Project and Open reading frame.

His most cited work include:

  • The complete genome sequence of the gastric pathogen Helicobacter pylori (3247 citations)
  • NCBI prokaryotic genome annotation pipeline (2119 citations)
  • cag, a pathogenicity island of Helicobacter pylori, encodes type I-specific and disease-associated virulence factors. (1726 citations)

What are the main themes of his work throughout his whole career to date?

The scientist’s investigation covers issues in Gene, Genome, Genetics, Computational biology and Gene prediction. His study brings together the fields of Identification and Gene. His research on Genome focuses in particular on Genome project.

His research in Computational biology intersects with topics in Transcriptome, In silico, DNA sequencing and Bioinformatics. His research on Gene prediction also deals with topics like

  • Algorithm that intertwine with fields like Markov chain and Markov model,
  • Hidden Markov model, which have a strong connection to Probabilistic logic and Machine learning. His Sequence analysis study combines topics in areas such as Multiple sequence alignment, Theoretical computer science and Artificial intelligence.

He most often published in these fields:

  • Gene (50.00%)
  • Genome (47.01%)
  • Genetics (40.30%)

What were the highlights of his more recent work (between 2014-2021)?

  • Genome (47.01%)
  • Gene prediction (37.31%)
  • Computational biology (36.57%)

In recent papers he was focusing on the following fields of study:

His primary areas of investigation include Genome, Gene prediction, Computational biology, Gene and Genome project. In his research on the topic of Genome, Eukaryotic genome is strongly related with Annotation. His Gene prediction study deals with the bigger picture of Genetics.

His Computational biology research is multidisciplinary, incorporating elements of Transcriptome, Single-nucleotide polymorphism and Identification. His work on Genomic organization as part of general Gene study is frequently linked to Pipeline and Chlamydomonas reinhardtii, therefore connecting diverse disciplines of science. His Genome project research integrates issues from Reference genome, Bioinformatics and Exon.

Between 2014 and 2021, his most popular works were:

  • NCBI prokaryotic genome annotation pipeline (2119 citations)
  • BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS (502 citations)
  • BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS (502 citations)

In his most recent research, the most cited papers focused on:

  • Gene
  • DNA
  • Genome

Mark Borodovsky spends much of his time researching Gene prediction, Gene, Genome, Computational biology and Genome project. His research on Gene prediction concerns the broader Genetics. His research related to Reference genome, Vertebrate and Genome Annotation Project and Cancer genome sequencing might be considered part of Genome.

His studies in Computational biology integrate themes in fields like Genomic organization, Promoter, Sequence motif, Operon and Protein sequencing. His Genome project research is multidisciplinary, incorporating perspectives in Genome evolution, Molecular Sequence Annotation, ENCODE and Bioinformatics. His biological study spans a wide range of topics, including Machine learning, RNA-Seq and Task, Artificial intelligence.

This overview was generated by a machine learning system which analysed the scientist’s body of work. If you have any feedback, you can contact us here.

Best Publications

The complete genome sequence of the gastric pathogen Helicobacter pylori

Jean-F. Tomb;Owen White;Anthony R. Kerlavage;Rebecca A. Clayton.
Nature (1997)

4166 Citations

NCBI prokaryotic genome annotation pipeline

Tatiana Tatusova;Michael DiCuccio;Azat Badretdin;Vyacheslav Chetvernin.
Nucleic Acids Research (2016)

2781 Citations

cag, a pathogenicity island of Helicobacter pylori, encodes type I-specific and disease-associated virulence factors.

Stefano Censini;Christina Lange;Zhaoying Xiang;Jean E. Crabtree.
Proceedings of the National Academy of Sciences of the United States of America (1996)

2446 Citations

GeneMark.hmm: New solutions for gene finding

Alexander V. Lukashin;Mark Borodovsky.
Nucleic Acids Research (1998)

1830 Citations

GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions

John Besemer;Alexandre Lomsadze;Mark Borodovsky.
Nucleic Acids Research (2001)

1649 Citations

The genome of woodland strawberry ( Fragaria vesca )

.
Nature Genetics (2011)

1232 Citations

GENMARK: Parallel gene recognition for both DNA strands

Mark Borodovsky;James D. McIninch.
Computational Biology and Chemistry (1993)

894 Citations

Ab initio Gene Identification in Metagenomic Sequences

Wenhan Zhu;Alexandre Lomsadze;Mark Borodovsky.
Nucleic Acids Research (2010)

884 Citations

GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses

John Besemer;Mark Borodovsky.
Nucleic Acids Research (2005)

761 Citations

Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training

Vardges Ter-Hovhannisyan;Alexandre Lomsadze;Yury O. Chernoff;Mark Borodovsky.
Genome Research (2008)

630 Citations

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