Fengzhu Sun

Research.com Recognitions

• 2015 - Fellow of the American Statistical Association (ASA)
• 2012 - Fellow of the American Association for the Advancement of Science (AAAS)

Overview

Best Publications

• Inferring domain-domain interactions from protein-protein interactions

  Minghua Deng;Shipra Mehta;Fengzhu Sun;Ting Chen

  1297
  Citations

• Prediction of protein function using protein-protein interaction data.

  Minghua Deng;Kui Zhang;Shipra Mehta;Ting Chen

  932
  Citations

• Correlation detection strategies in microbial data sets vary widely in sensitivity and precision

  Sophie Weiss;Will Van Treuren;Catherine Lozupone;Karoline Faust;Karoline Faust

  846
  Citations

• Marine bacterial, archaeal and protistan association networks reveal ecological linkages.

  Joshua A. Steele;Peter D. Countway;Li Xia;Patrick D. Vigil

  692
  Citations

• Identifying viruses from metagenomic data using deep learning.

  Jie Ren;Kai Song;Chao Deng;Nathan A. Ahlgren

  613
  Citations

• VirFinder: a novel k -mer based tool for identifying viral sequences from assembled metagenomic data

  Jie Ren;Nathan A. Ahlgren;Nathan A. Ahlgren;Yang Young Lu;Jed A. Fuhrman

  523
  Citations

• A dynamic programming algorithm for haplotype block partitioning

  Kui Zhang;Minghua Deng;Ting Chen;Michael S. Waterman

  468
  Citations

• Taq DNA polymerase slippage mutation rates measured by PCR and quasi‐likelihood analysis: (CA/GT)n and (A/T)n microsatellites

  Deepali Shinde;Yinglei Lai;Fengzhu Sun;Norman Arnheim

  370
  Citations

• Haplotype Block Structure and Its Applications to Association Studies: Power and Study Designs

  Kui Zhang;Peter Calabrese;Magnus Nordborg;Fengzhu Sun

  357
  Citations

• Local similarity analysis reveals unique associations among marine bacterioplankton species and environmental factors

  Quansong Ruan;Debojyoti Dutta;Michael S. Schwalbach;Joshua A. Steele

  304
  Citations

• The Relationship Between Microsatellite Slippage Mutation Rate and the Number of Repeat Units

  Yinglei Lai;Fengzhu Sun

  301
  Citations

• A critical assessment of Mus musculus gene function prediction using integrated genomic evidence.

  Lourdes Pena-Castillo;Murat Tasan;Chad L Myers;Hyunju Lee

  298
  Citations

• Clustering of Caucasian Leber hereditary optic neuropathy patients containing the 11778 or 14484 mutations on an mtDNA lineage.

  Brown;F. Sun;D.C. Wallace

  288
  Citations

• Alignment-free $d_2^*$ oligonucleotide frequency dissimilarity measure improves prediction of hosts from metagenomically-derived viral sequences

  Nathan A. Ahlgren;Jie Ren;Yang Young Lu;Jed A. Fuhrman

  272
  Citations

• CancerLocator: non-invasive cancer diagnosis and tissue-of-origin prediction using methylation profiles of cell-free DNA.

  Shuli Kang;Qingjiao Li;Quan Chen;Yonggang Zhou

  254
  Citations

• Assessment of the reliability of protein-protein interactions and protein function prediction.

  Minghua Deng;Fengzhu Sun;Ting Chen

  238
  Citations

• An integrated probabilistic model for functional prediction of proteins.

  Minghua Deng;Ting Chen;Fengzhu Sun

  238
  Citations

• Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates

  Li C Xia;Joshua A Steele;Joshua A Steele;Jacob A Cram;Zoe G Cardon

  237
  Citations

• Haplotype block partitioning and tag SNP selection using genotype data and their applications to association studies

  Kui Zhang;Zhaohui S. Qin;Jun S. Liu;Ting Chen

  232
  Citations

• Alignment-free sequence comparison (I): statistics and power.

  Gesine Reinert;David Chew;Fengzhu Sun;Michael S. Waterman

  232
  Citations