Karoline Faust

Best Publications

• Structure, function and diversity of the healthy human microbiome

  Curtis Huttenhower;Curtis Huttenhower;Dirk Gevers;Rob Knight;Rob Knight;Sahar Abubucker

  10953
  Citations

• Microbial interactions: from networks to models

  Karoline Faust;Jeroen Raes

  4006
  Citations

• A framework for human microbiome research

  Barbara A. Methé;Karen E. Nelson;Mihai Pop;Heather H. Creasy

  2698
  Citations

• Population-level analysis of gut microbiome variation

  Gwen Falony;Marie Joossens;Marie Joossens;Sara Vieira-Silva;Jun Wang

  2419
  Citations

• Microbial Co-occurrence Relationships in the Human Microbiome

  Karoline Faust;J. Fah Sathirapongsasuti;Jacques Izard;Jacques Izard;Nicola Segata

  1635
  Citations

• Determinants of community structure in the global plankton interactome

  Gipsi Lima-Mendez;Karoline Faust;Nicolas Henry;Johan Decelle

  1028
  Citations

• Correlation detection strategies in microbial data sets vary widely in sensitivity and precision

  Sophie Weiss;Will Van Treuren;Catherine Lozupone;Karoline Faust;Karoline Faust

  846
  Citations

• From hairballs to hypotheses-biological insights from microbial networks.

  Lisa Röttjers;Karoline Faust

  625
  Citations

• Earth microbial co-occurrence network reveals interconnection pattern across microbiomes

  Bin Ma;Yiling Wang;Shudi Ye;Shan Liu

  516
  Citations

• Computational approaches to predict bacteriophage–host relationships

  Robert A. Edwards;Katelyn McNair;Karoline Faust;Jeroen Raes;Jeroen Raes

  487
  Citations

• Metagenomics meets time series analysis: Unraveling microbial community dynamics

  Karoline Faust;Karoline Faust;Leo L. Lahti;Leo L. Lahti;Didier Gonze;Willem M De Vos;Willem M De Vos

  469
  Citations

• CoNet app: inference of biological association networks using Cytoscape

  Karoline Faust;Jeroen Raes

  452
  Citations

• Open challenges for microbial network construction and analysis

  Unknown

  274
  Citations

• Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes

  Pascal Hingamp;Nigel Grimsley;Silvia G Acinas;Camille Clerissi

  257
  Citations

• Millions of reads, thousands of taxa: microbial community structure and associations analyzed via marker genes

  Miklós Bálint;Mohammad Bahram;Mohammad Bahram;A. Murat Eren;A. Murat Eren;Karoline Faust

  210
  Citations

• Cross-biome comparison of microbial association networks

  Karoline Faust;Gipsi Lima-Mendez;Gipsi Lima-Mendez;Jean-Sébastien Lerat;Jarupon F. Sathirapongsasuti

  200
  Citations

• Synthetic ecology of the human gut microbiota.

  Gino Vrancken;Ann C. Gregory;Geert R. B. Huys;Karoline Faust

  199
  Citations

• Temporal variability in quantitative human gut microbiome profiles and implications for clinical research.

  Doris Vandeputte;Lindsey De Commer;Raul Y. Tito;Gunter Kathagen

  197
  Citations

• Soil microbiome responses to the short‐term effects of Amazonian deforestation

  Acacio A. Navarrete;Siu M. Tsai;Lucas W. Mendes;Karoline Faust

  193
  Citations

• Structure, function and diversity of the healthy human microbiome

  Curtis Huttenhower;Dirk Gevers;Rob Knight;Sahar Abubucker

  98
  Citations