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Microbiology

D-Index
85
Citations
29651
World Ranking
867
National Ranking
399

Overview

Charles Y. Chiu is a researcher affiliated with the University of California, San Francisco in the United States. Their work spans the field of Medicine, with a concentration on Infectious Diseases, Epidemiology, and Molecular Biology. They have also contributed to studies in Animal Science and Zoology, as well as Public Health, Environmental, and Occupational Health.

Their research frequently covers topics related to SARS-CoV-2 and COVID-19, including detection and testing, clinical research studies, and respiratory viral infections. Other areas of focus include animal virus infections, mosquito-borne diseases and control, and viral gastroenteritis research and epidemiology.

Frequent publication venues for their work include bioRxiv (Cold Spring Harbor Laboratory), Zenodo (CERN European Organization for Nuclear Research), Open Forum Infectious Diseases, Clinical Infectious Diseases, and Nature Communications.

Selected recent papers by Charles Y. Chiu include:

  • CRISPR-Cas12-based detection of SARS-CoV-2, 2020, Nature Biotechnology
  • Rapid pathogen detection by metagenomic next-generation sequencing of infected body fluids, 2020, Nature Medicine
  • Transmission, infectivity, and neutralization of a spike L452R SARS-CoV-2 variant, 2021, Cell
  • Emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States, 2021, Cell
  • Cryptic transmission of SARS-CoV-2 in Washington state, 2020, Science

Charles Y. Chiu frequently collaborates with a number of researchers. Notable co-authors include Venice Servellita, Steve Miller, Alicia Sotomayor-González, Noah Brazer, and Scot Federman.

Best Publications

  • CRISPR-Cas12-based detection of SARS-CoV-2.

    James P. Broughton;Xianding Deng;Guixia Yu;Clare L. Fasching

  • Clinical metagenomics

    Unknown

  • Clinical Metagenomic Next-Generation Sequencing for Pathogen Detection.

    Wei Gu;Steve Miller;Charles Y. Chiu

  • Actionable Diagnosis of Neuroleptospirosis by Next-Generation Sequencing

    Michael R. Wilson;Samia N. Naccache;Erik Samayoa;Mark Biagtan

  • Clinical Metagenomic Sequencing for Diagnosis of Meningitis and Encephalitis

    Michael R Wilson;Hannah A Sample;Kelsey C Zorn;Shaun Arevalo

  • Establishment and cryptic transmission of Zika virus in Brazil and the Americas

    N R Faria;Joshua Quick;I M Claro;J Thézé

  • Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis

    Alexander L. Greninger;Samia N. Naccache;Scot Federman;Guixia Yu

  • Rapid pathogen detection by metagenomic next-generation sequencing of infected body fluids.

    Wei Gu;Xianding Deng;Marco Lee;Yasemin D. Sucu

  • Validation of Metagenomic Next-Generation Sequencing Tests for Universal Pathogen Detection.

    Robert Schlaberg;Charles Y. Chiu;Steve Miller;Gary W. Procop

  • Laboratory validation of a clinical metagenomic sequencing assay for pathogen detection in cerebrospinal fluid

    Steve Miller;Samia N. Naccache;Samia N. Naccache;Erik Samayoa;Kevin Messacar

  • A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples

    Samia N. Naccache;Scot Federman;Narayanan Veeraraghavan;Matei Zaharia

  • Erratum to: Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: the continuing case for reference genome sequencing

    Alexander L. Greninger;Kevin Messacar;Thelma Dunnebacke;Samia N. Naccache

  • Transmission, infectivity, and neutralization of a spike L452R SARS-CoV-2 variant.

    Xianding Deng;Miguel A. Garcia-Knight;Mir M. Khalid;Venice Servellita

  • A novel outbreak enterovirus D68 strain associated with acute flaccid myelitis cases in the USA (2012–14): a retrospective cohort study

    Alexander L Greninger;Samia N Naccache;Kevin Messacar;Anna Clayton

  • Taxonomy of the order Mononegavirales: update 2018

    Gaya K. Amarasinghe;Nidia G. Aréchiga Ceballos;Ashley C. Banyard;Christopher F. Basler

  • Integrating host response and unbiased microbe detection for lower respiratory tract infection diagnosis in critically ill adults

    Charles Langelier;Katrina L. Kalantar;Farzad Moazed;Michael R. Wilson

  • Nanopore DNA Sequencing and Genome Assembly on the International Space Station

    Sarah L. Castro-Wallace;Charles Y. Chiu;Kristen K. John;Sarah E. Stahl

  • Recovery of divergent avian bornaviruses from cases of proventricular dilatation disease: identification of a candidate etiologic agent.

    Amy L Kistler;Ady Gancz;Susan Clubb;Peter Skewes-Cox

  • Diagnosis of neuroinvasive astrovirus infection in an immunocompromised adult with encephalitis by unbiased next-generation sequencing

    Samia N. Naccache;Karl S. Peggs;Frank M. Mattes;Rahul Phadke

  • Cryptic transmission of SARS-CoV-2 in Washington state.

    Trevor Bedford;Trevor Bedford;Alexander L. Greninger;Alexander L. Greninger;Pavitra Roychoudhury;Pavitra Roychoudhury;Lea M. Starita

  • Emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States.

    Nicole L. Washington;Karthik Gangavarapu;Mark Zeller;Alexandre Bolze

  • Viral Infection in Acute Exacerbation of Idiopathic Pulmonary Fibrosis

    Sharon Chao Wootton;Dong Soon Kim;Yasuhiro Kondoh;Eunice Chen

Frequent Co-Authors

Alexander L. Greninger
Alexander L. Greninger University of Washington
Joseph L. DeRisi
Joseph L. DeRisi University of California, San Francisco
Eric Delwart
Eric Delwart University of California, San Francisco
Jean L. Patterson
Jean L. Patterson Texas Biomedical Research Institute
Oliver G. Pybus
Oliver G. Pybus University of Oxford
Nuno Rodrigues Faria
Nuno Rodrigues Faria Imperial College London
Don Ganem
Don Ganem Via Nova Therapeutics
Kristian G. Andersen
Kristian G. Andersen Scripps Research Institute
Trevor Bedford
Trevor Bedford Fred Hutchinson Cancer Research Center
Carlos F. Arias
Carlos F. Arias National Autonomous University of Mexico

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