World's Best Scientists 2026 revealed!

D-Index & Metrics

Computer Science

D-Index
32
Citations
5089
World Ranking
13072
National Ranking
5263

Overview

Cecilia N. Arighi is affiliated with the University of Delaware in the United States. Their research primarily targets the field of Biochemistry, Genetics and Molecular Biology, with a particular focus on Molecular Biology. They have contributed substantially to subfields that include Artificial Intelligence, Cancer Research, Information Systems and Management, and Radiology, Nuclear Medicine and Imaging.

The scientist's work covers multiple topics related to biomedical and computational biology. Key research topics include Biomedical Text Mining and Ontologies, Genomics and Phylogenetic Studies, Bioinformatics and Genomic Networks, Genetics, Bioinformatics, and Biomedical Research, Topic Modeling, Natural Language Processing Techniques, and Semantic Web and Ontologies.

Arighi has coauthored research with a range of collaborators, with notable frequent collaborators being Chuming Chen, María Martin, Cathy Wu, Alex Bateman, and Hongzhan Huang. These partnerships indicate active interdisciplinary and collaborative research efforts.

In terms of publications, Arighi frequently publishes in venues such as Database, Bioinformatics, Bioinformatics Advances, Briefings in Bioinformatics, and proceedings of the 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). Their recent papers include:

  • UniProt: the Universal Protein Knowledgebase in 2025, 2024, Nucleic Acids Research
  • A crowdsourcing open platform for literature curation in UniProt, 2021, PLoS Biology
  • Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research, 2020, Briefings in Bioinformatics
  • BioRED: a rich biomedical relation extraction dataset, 2022, Briefings in Bioinformatics
  • UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase, 2020, Bioinformatics

Best Publications

  • UniProt: A hub for protein information

    Alex Bateman;Maria Jesus Martin;Claire O'Donovan;Michele Magrane

  • UniProt: the universal protein knowledgebase in 2021

    Alex Bateman;Maria-Jesus Martin;Sandra Orchard

  • The Gene Ontology resource: enriching a GOld mine

    Seth Carbon;Eric Douglass;Benjamin M Good

  • Activities at the Universal Protein Resource (UniProt)

    R Apweiler;A Bateman;MJ Martin;C O'Donovan

  • UniProt: the Universal Protein Knowledgebase in 2025.

    Unknown

  • The Universal Protein Resource (UniProt) in 2010

    R Apweiler;MJ Martin;C O'Donovan;M Magrane

  • A crowdsourcing open platform for literature curation in UniProt

    Unknown

  • Text mining for the biocuration workflow

    Lynette Hirschman;Gully A. P. C. Burns;Martin Krallinger;Cecilia Arighi

  • The Protein Ontology: a structured representation of protein forms and complexes

    Darren A. Natale;Cecilia N. Arighi;Winona C. Barker;Judith A. Blake

  • iPTMnet: an integrated resource for protein post-translational modification network discovery.

    Hongzhan Huang;Cecilia N Arighi;Cecilia N Arighi;Karen E Ross;Jia Ren

  • BioRED: a rich biomedical relation extraction dataset

    Unknown

  • Framework for a protein ontology.

    Darren A. Natale;Cecilia N. Arighi;Winona C. Barker;Judith A. Blake

  • On expert curation and scalability: UniProtKB/Swiss-Prot as a case study.

    Sylvain Poux;Cecilia N Arighi;Michele Magrane;Alex Bateman

  • Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research.

    Franziska Hufsky;Kevin Lamkiewicz;Alexandre Almeida;Abdel Aouacheria

  • Overview of the BioCreative III Workshop

    Cecilia N. Arighi;Zhiyong Lu;Martin Krallinger;Kevin Bretonnel Cohen

  • Protein Ontology (PRO): enhancing and scaling up the representation of protein entities

    Darren A. Natale;Cecilia N. Arighi;Judith A. Blake;Jonathan P. Bona

  • BioCreative III interactive task: an overview.

    Cecilia N Arighi;Phoebe M Roberts;Shashank Agarwal;Sanmitra Bhattacharya

  • PIRSF family classification system for protein functional and evolutionary analysis.

    Anastasia N. Nikolskaya;Cecilia N. Arighi;Hongzhan Huang;Winona C. Barker

  • Overview of the interactive task in BioCreative V

    Qinghua Wang;Shabbir S. Abdul;Lara Almeida;Sophia Ananiadou

  • An overview of the BioCreative 2012 Workshop Track III: interactive text mining task

    Cecilia N. Arighi;Ben Carterette;K. Bretonnel Cohen;Martin Krallinger

  • Protein Ontology: a controlled structured network of protein entities

    Darren A. Natale;Cecilia N Arighi;Judith A. Blake;Carol J. Bult

  • Structural mechanism for ubiquitinated-cargo recognition by the Golgi-localized, γ-ear-containing, ADP-ribosylation-factor-binding proteins

    Gali Prag;Sangho Lee;Rafael Mattera;Cecilia N. Arighi

  • BioCreative-IV virtual issue.

    Cecilia N. Arighi;Cathy H. Wu;Kevin Bretonnel Cohen;Lynette Hirschman

  • miRTex: A Text Mining System for miRNA-Gene Relation Extraction.

    Gang Li;Karen E. Ross;Cecilia N. Arighi;Yifan Peng

  • Expert curation in UniProtKB: a case study on dealing with conflicting and erroneous data

    Sylvain Poux;Michele Magrane;Cecilia N. Arighi;Alan Bridge

Frequent Co-Authors

Cathy H. Wu
Cathy H. Wu University of Delaware
Hongzhan Huang
Hongzhan Huang University of Delaware
K. Vijay-Shanker
K. Vijay-Shanker University of Delaware
Judith A. Blake
Judith A. Blake Edith Cowan University
Zhiyong Lu
Zhiyong Lu National Institutes of Health
Maria Jesus Martin
Maria Jesus Martin European Bioinformatics Institute
Peter D'Eustachio
Peter D'Eustachio New York University
Alex Bateman
Alex Bateman European Bioinformatics Institute
Barry Smith
Barry Smith University at Buffalo, State University of New York
Patrick Ruch
Patrick Ruch Swiss Institute of Bioinformatics

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