Chih-Hsuan Wei

Best Publications

• BioCreative V CDR task corpus: a resource for chemical disease relation extraction

  Jiao Li;Yueping Sun;Robin J. Johnson;Daniela Sciaky

  834
  Citations

• PubTator: a web-based text mining tool for assisting biocuration

  Chih Hsuan Wei;Hung Yu Kao;Zhiyong Lu

  624
  Citations

• PubTator central: automated concept annotation for biomedical full text articles

  Chih-Hsuan Wei;Alexis Allot;Robert Leaman;Zhiyong Lu

  417
  Citations

• Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chemical-disease relation (CDR) task

  Chih-Hsuan Wei;Yifan Peng;Robert Leaman;Allan Peter Davis

  381
  Citations

• tmChem: a high performance approach for chemical named entity recognition and normalization

  Robert Leaman;Chih-Hsuan Wei;Zhiyong Lu

  303
  Citations

• GNormPlus: An Integrative Approach for Tagging Genes, Gene Families, and Protein Domains.

  Chih Hsuan Wei;Hung Yu Kao;Zhiyong Lu

  243
  Citations

• tmVar: a text mining approach for extracting sequence variants in biomedical literature.

  Chih Hsuan Wei;Bethany R. Harris;Hung Yu Kao;Zhiyong Lu

  197
  Citations

• The gene normalization task in BioCreative III

  Zhiyong Lu;Hung-Yu Kao;Chih-Hsuan Wei;Minlie Huang

  179
  Citations

• BioRED: a rich biomedical relation extraction dataset

  Unknown

  173
  Citations

• Large-scale event extraction from literature with multi-level gene normalization

  Sofie van Landeghem;Jari Björne;Jari Björne;Chih Hsuan Wei;Kai Hakala

  147
  Citations

• On expert curation and scalability: UniProtKB/Swiss-Prot as a case study.

  Sylvain Poux;Cecilia N Arighi;Michele Magrane;Alex Bateman

  141
  Citations

• LitVar: a semantic search engine for linking genomic variant data in PubMed and PMC.

  Alexis Allot;Yifan Peng;Chih-Hsuan Wei;Kyubum Lee

  137
  Citations

• PubTator 3.0: an AI-powered literature resource for unlocking biomedical knowledge

  Unknown

  113
  Citations

• Cross-species gene normalization by species inference

  Unknown

  107
  Citations

• SR4GN: a species recognition software tool for gene normalization.

  Chih Hsuan Wei;Chih Hsuan Wei;Hung Yu Kao;Zhiyong Lu

  107
  Citations

• Accelerating literature curation with text-mining tools: a case study of using PubTator to curate genes in PubMed abstracts

  Chih Hsuan Wei;Bethany R. Harris;Donghui Li;Tanya Z. Berardini

  105
  Citations

• tmVar 2.0: integrating genomic variant information from literature with dbSNP and ClinVar for precision medicine.

  Chih-Hsuan Wei;Lon Phan;Juliana Feltz;Rama Maiti

  101
  Citations

• An overview of the BioCreative 2012 Workshop Track III: interactive text mining task

  Cecilia N. Arighi;Ben Carterette;K. Bretonnel Cohen;Martin Krallinger

  92
  Citations

• Improving chemical disease relation extraction with rich features and weakly labeled data

  Yifan Peng;Chih-Hsuan Wei;Zhiyong Lu

  84
  Citations

• PMC text mining subset in BioC: about three million full-text articles and growing.

  Donald C Comeau;Chih-Hsuan Wei;Rezarta Islamaj Doğan;Zhiyong Lu

  81
  Citations