World's Best Scientists 2026 revealed!

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Computer Science

D-Index
38
Citations
5527
World Ranking
10321
National Ranking
249

Overview

Anita Burgun is affiliated with Université Paris Cité in France, with a research focus spanning medicine, biochemistry, genetics, molecular biology, and computer science. Their work integrates multiple disciplines including artificial intelligence, molecular biology, genetics, infectious diseases, and neurology.

The main topics covered in their research include:

  • Biomedical Text Mining and Ontologies
  • Long-Term Effects of COVID-19
  • COVID-19 Clinical Research Studies
  • Genomics and Rare Diseases
  • Topic Modeling
  • Machine Learning in Healthcare
  • Radiomics and Machine Learning in Medical Imaging

They have contributed prominently to several recent papers, such as:

  • "Association between antidepressant use and reduced risk of intubation or death in hospitalized patients with COVID-19: results from an observational study" (2021, Molecular Psychiatry)
  • "International electronic health record-derived COVID-19 clinical course profiles: the 4CE consortium" (2020, npj Digital Medicine)
  • "Evolving phenotypes of non-hospitalized patients that indicate long COVID" (2021, BMC Medicine)
  • "Electronic health records for the diagnosis of rare diseases" (2020, Kidney International)
  • "Diagnosis support systems for rare diseases: a scoping review" (2020, Orphanet Journal of Rare Diseases)

Key frequent co-authors collaborating with Anita Burgun include Antoine Neuraz, Nicolas Garcelon, Bastien Rance, Mélodie Bernaux, and Alexandre Gramfort.

Their research has been published in a variety of venues, notably:

  • Studies in health technology and informatics
  • bioRxiv (Cold Spring Harbor Laboratory)
  • Kidney International
  • JMIR Medical Informatics
  • Orphanet Journal of Rare Diseases

Within their multidisciplinary approach, the integration of artificial intelligence and machine learning techniques into healthcare data analysis is a consistent theme. This approach supports advances in understanding long-term outcomes of COVID-19, clinical profiles derived from electronic health records, and diagnostic support for rare diseases.

Best Publications

  • Aggregating UMLS semantic types for reducing conceptual complexity.

    Alexa T. McCray;Anita Burgun;Olivier Bodenreider

  • Big Data and machine learning in radiation oncology: State of the art and future prospects.

    Jean-Emmanuel Bibault;Philippe Giraud;Anita Burgun

  • International electronic health record-derived COVID-19 clinical course profiles: the 4CE consortium

    Gabriel A. Brat;Griffin M. Weber;Nils Gehlenborg;Paul Avillach

  • A clinician friendly data warehouse oriented toward narrative reports: Dr. Warehouse.

    Nicolas Garcelon;Antoine Neuraz;Rémi Salomon;Hassan Faour

  • The Ontology-Epistemology Divide: A Case Study in Medical Terminology

    Olivier Bodenreider;Barry Smith;Anita Burgun

  • NON-LEXICAL APPROACHES TO IDENTIFYING ASSOCIATIVE RELATIONS IN THE GENE ONTOLOGY

    Olivier Bodenreider;Marc Aubry;Anita Burgun

  • Adverse Drug Reaction Identification and Extraction in Social Media: A Scoping Review

    Jérémy Lardon;Redhouane Abdellaoui;Florelle Bellet;Hadyl Asfari

  • Translational research platforms integrating clinical and omics data: a review of publicly available solutions

    Vincent Canuel;Bastien Rance;Paul Avillach;Patrice Degoulet

  • Natural language processing of radiology reports for the detection of thromboembolic diseases and clinically relevant incidental findings

    Anne-Dominique Pham;Aurélie Névéol;Thomas Lavergne;Daisuke Yasunaga

  • Radiomics and Machine Learning for Radiotherapy in Head and Neck Cancers

    Paul Giraud;Philippe Giraud;Anne Gasnier;Radouane El Ayachy

  • Investigating subsumption in SNOMED CT: An exploration into large description logic-based biomedical terminologies

    Olivier Bodenreider;Barry Smith;Anand Kumar;Anita Burgun

  • Accessing and integrating data and knowledge for biomedical research.

    A. Burgun;O. Bodenreider

  • Modelling a decision-support system for oncology using rule-based and case-based reasoning methodologies

    Delphine Rossille;Delphine Rossille;Jean-François Laurent;Anita Burgun

  • Diagnosis support systems for rare diseases: a scoping review.

    Carole Faviez;Xiaoyi Chen;Nicolas Garcelon;Antoine Neuraz;Antoine Neuraz

  • A framework for validating AI in precision medicine: considerations from the European ITFoC consortium.

    Rosy Tsopra;Xose Fernandez;Claudio Luchinat;Lilia Alberghina

  • Electronic health records for the diagnosis of rare diseases

    Nicolas Garcelon;Nicolas Garcelon;Anita Burgun;Rémi Salomon;Antoine Neuraz;Antoine Neuraz

  • Comparing terms, concepts and semantic classes in WordNet and the Unified Medical Language System

    Anita Burgun;Olivier Bodenreider

  • Desiderata for domain reference ontologies in biomedicine

    Anita Burgun

  • Ontology and medical diagnosis.

    Valérie Bertaud-Gounot;Régis Duvauferrier;Anita Burgun

  • Investigating subsumption in DL-based terminologies: a case study in SNOMED CT

    Olivier Bodenreider;Barry Smith;Anand Kumar;Anita Burgun

  • A transversal approach to predict gene product networks from ontology-based similarity.

    Julie Chabalier;Jean Mosser;Anita Burgun

  • Mapping the UMLS Semantic Network into general ontologies.

    Anita Burgun;Olivier Bodenreider

  • Unsupervised,corpus-based method for extending a biomedical terminology

    Olivier Bodenreider;Thomas Rindflesch;Anita Burgun

  • International Electronic Health Record-Derived COVID-19 Clinical Course Profiles: The 4CE Consortium

    Gabriel A Brat;Griffin M Weber;Nils Gehlenborg;Paul Avillach

Frequent Co-Authors

Olivier Bodenreider
Olivier Bodenreider National Institutes of Health
Pierre Zweigenbaum
Pierre Zweigenbaum University of Paris-Saclay
Thomas C. Rindflesch
Thomas C. Rindflesch National Institutes of Health
Patrick Ruch
Patrick Ruch Swiss Institute of Bioinformatics
Cédric Lemogne
Cédric Lemogne Université Paris Cité
Sophie Saunier
Sophie Saunier Université Paris Cité
James J. Cimino
James J. Cimino University of Alabama at Birmingham
Barry Smith
Barry Smith University at Buffalo, State University of New York
Stanislas Lyonnet
Stanislas Lyonnet Université Paris Cité

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