D-Index & Metrics Best Publications

D-Index & Metrics D-index (Discipline H-index) only includes papers and citation values for an examined discipline in contrast to General H-index which accounts for publications across all disciplines.

Discipline name D-index D-index (Discipline H-index) only includes papers and citation values for an examined discipline in contrast to General H-index which accounts for publications across all disciplines. Citations Publications World Ranking National Ranking
Genetics and Molecular Biology D-index 75 Citations 34,271 153 World Ranking 1185 National Ranking 635

Research.com Recognitions

Awards & Achievements

2014 - Fellow of the American Association for the Advancement of Science (AAAS)

2014 - Fellow of the Indian National Academy of Engineering (INAE)

Overview

What is he best known for?

The fields of study he is best known for:

  • Gene
  • DNA
  • Genetics

His primary areas of investigation include Genetics, Computational biology, Gene, Gene regulatory network and Biological network. His primary area of study in Computational biology is in the field of Systems biology. His study looks at the intersection of Gene regulatory network and topics like Model organism with Mrna expression and Signalling.

His Biological network study is focused on Bioinformatics in general. His work deals with themes such as Cancer, Ovarian cancer and Cancer genetics, which intersect with Bioinformatics. His Interaction network research is multidisciplinary, relying on both ConsensusPathDB and Human Protein Reference Database.

His most cited work include:

  • Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks (19179 citations)
  • Cytoscape 2.8 (3168 citations)
  • Integration of biological networks and gene expression data using Cytoscape. (1844 citations)

What are the main themes of his work throughout his whole career to date?

Trey Ideker mostly deals with Computational biology, Genetics, Gene, Genome and Systems biology. His work on Biological network as part of general Computational biology study is frequently linked to Protein network, therefore connecting diverse disciplines of science. Gene connects with themes related to Cancer cell in his study.

His Systems biology study combines topics in areas such as Proteomics, Data science and Genomics. In DNA repair, Trey Ideker works on issues like DNA damage, which are connected to Cell biology. The concepts of his Cancer study are interwoven with issues in Mutation, Cancer research and Bioinformatics.

He most often published in these fields:

  • Computational biology (38.14%)
  • Genetics (30.33%)
  • Gene (22.22%)

What were the highlights of his more recent work (between 2018-2021)?

  • Computational biology (38.14%)
  • Genome (12.31%)
  • Gene (22.22%)

In recent papers he was focusing on the following fields of study:

His primary scientific interests are in Computational biology, Genome, Gene, Cancer and Virology. His studies in Computational biology integrate themes in fields like Cancer cell and Protein–protein interaction. His Genome study is associated with Genetics.

His study in the field of Establishment of sister chromatid cohesion, Chromosome segregation, Cohesin complex and Mitosis is also linked to topics like Prefoldin complex. His study looks at the relationship between Gene and fields such as Natural selection, as well as how they intersect with chemical problems. The various areas that he examines in his Cancer study include Pan cancer, Precision medicine, Cancer research and PI3K/AKT/mTOR pathway.

Between 2018 and 2021, his most popular works were:

  • A SARS-CoV-2 protein interaction map reveals targets for drug repurposing. (1317 citations)
  • A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-Repurposing. (187 citations)
  • DNA methylation aging clocks: challenges and recommendations (142 citations)

In his most recent research, the most cited papers focused on:

  • Gene
  • DNA
  • Cancer

Trey Ideker spends much of his time researching Computational biology, Cancer, Gene, Genome and Systems biology. Trey Ideker performs integrative study on Computational biology and Gambit in his works. His study in Cancer is interdisciplinary in nature, drawing from both Stem cell, Chromosomal Alterations and Big data.

His work on Transmembrane domain, Locus, Genetic Fitness and Intergenic region as part of general Gene research is frequently linked to Transmembrane protein, thereby connecting diverse disciplines of science. His Human genome study in the realm of Genome interacts with subjects such as Set. His Systems biology research includes elements of Ontology and Software engineering.

This overview was generated by a machine learning system which analysed the scientist’s body of work. If you have any feedback, you can contact us here.

Best Publications

Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks

Paul Shannon;Andrew Markiel;Owen Ozier;Nitin S. Baliga.
Genome Research (2003)

23505 Citations

Cytoscape 2.8

Michael E. Smoot;Keiichiro Ono;Johannes Ruscheinski;Peng-Liang Wang.
Bioinformatics (2011)

3168 Citations

Integration of biological networks and gene expression data using Cytoscape

Melissa S Cline;Michael Smoot;Ethan Cerami;Allan Kuchinsky.
Nature Protocols (2007)

2522 Citations

Integrated genomic and proteomic analyses of a systematically perturbed metabolic network.

Trey Ideker;Vesteinn Thorsson;Jeffrey A. Ranish;Rowan Christmas.
Science (2001)

2510 Citations

AN EW APPROACH TO DECODING LIFE: Systems Biology

Trey Ideker;Timothy Galitski;Leroy Hood.
Annual Review of Genomics and Human Genetics (2001)

2171 Citations

Integrated Genomic Characterization of Papillary Thyroid Carcinoma

Nishant Agrawal;Rehan Akbani;B. Arman Aksoy;Adrian Ally.
Cell (2014)

1857 Citations

Network-based classification of breast cancer metastasis.

Han‐Yu Chuang;Eunjung Lee;Eunjung Lee;Yu‐Tsueng Liu;Doheon Lee.
Molecular Systems Biology (2007)

1759 Citations

Genome-wide Methylation Profiles Reveal Quantitative Views of Human Aging Rates

Gregory Hannum;Justin Guinney;Ling Zhao;Ling Zhao;Li Zhang.
Molecular Cell (2013)

1677 Citations

Discovering regulatory and signalling circuits in molecular interaction networks.

Trey Ideker;Owen Ozier;Benno Schwikowski;Andrew F. Siegel.
intelligent systems in molecular biology (2002)

1351 Citations

A travel guide to Cytoscape plugins

Rintaro Saito;Michael E Smoot;Keiichiro Ono;Johannes Ruscheinski.
Nature Methods (2012)

1318 Citations

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