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Shinya Fushinobu

Shinya Fushinobu

D-Index & Metrics

Chemistry

D-Index
53
Citations
8434
World Ranking
13237
National Ranking
1007

Biology and Biochemistry

D-Index
54
Citations
8521
World Ranking
15808
National Ranking
1128

Overview

Shinya Fushinobu is affiliated with the University of Tokyo in Japan and specializes in research within Biochemistry, Genetics, and Molecular Biology, contributing to a total of 77 publications in this field. Their work spans notable subfields including Molecular Biology, Biotechnology, Nutrition and Dietetics, Organic Chemistry, and Plant Science.

The scientist's research focuses on areas such as Enzyme Production and Characterization, Carbohydrate Chemistry and Synthesis, Enzyme Structure and Function, Glycosylation and Glycoproteins Research, Biofuel Production and Bioconversion, Microbial Metabolites in Food Biotechnology, and Polysaccharides and Plant Cell Walls.

Frequent collaborators in their research include Chihaya Yamada, T. Arakawa, Akihiro Ishiwata, Toma Kashima, and Kiyotaka Fujita. Their scholarly work has been published repeatedly in several scientific venues. These include bioRxiv (Cold Spring Harbor Laboratory), FEBS Journal, Nature Communications, Journal of Biological Chemistry, and Bulletin of Applied Glycoscience.

Notable recent papers authored or coauthored by Shinya Fushinobu include:

  • Structure and evolution of the bifidobacterial carbohydrate metabolism proteins and enzymes, 2021, Biochemical Society Transactions
  • Butyrate producing colonic Clostridiales metabolise human milk oligosaccharides and cross feed on mucin via conserved pathways, 2020, Nature Communications
  • Structural basis for selectivity in a highly reducing type II polyketide synthase, 2020, Nature Chemical Biology
  • A bacterial sulfoglycosidase highlights mucin O-glycan breakdown in the gut ecosystem, 2023, Nature Chemical Biology
  • Identification of difructose dianhydride I synthase/hydrolase from an oral bacterium establishes a novel glycoside hydrolase family, 2021, Journal of Biological Chemistry

Best Publications

  • Fungal denitrification and nitric oxide reductase cytochrome P450nor

    Hirofumi Shoun;Shinya Fushinobu;Li Jiang;Sang-Wan Kim

  • Nitrous oxide emission from nitrifying activated sludge dependent on denitrification by ammonia-oxidizing bacteria.

    Sang-Wan Kim;Morio Miyahara;Shinya Fushinobu;Takayoshi Wakagi

  • Crystal structure of cobalt-containing nitrile hydratase.

    Akimasa Miyanaga;Shinya Fushinobu;Kiyoshi Ito;Takayoshi Wakagi

  • Crystallographic and mutational analyses of an extremely acidophilic and acid-stable xylanase: biased distribution of acidic residues and importance of Asp37 for catalysis at low pH.

    Shinya Fushinobu;Kiyoshi Ito;Michiko Konno;Takayoshi Wakagi

  • Ten years of CAZypedia: a living encyclopedia of carbohydrate-active enzymes

    Wade Abbott;Orly Alber;Ed Bayer;Jean-Guy Berrin

  • Trimeric crystal structure of the glycoside hydrolase family 42 β-galactosidase from Thermus thermophilus A4 and the structure of its complex with galactose

    Masafumi Hidaka;Shinya Fushinobu;Naomi Ohtsu;Hidemasa Motoshima

  • Butyrate producing colonic Clostridiales metabolise human milk oligosaccharides and cross feed on mucin via conserved pathways.

    Michael Jakob Pichler;Chihaya Yamada;Bashar Shuoker;Bashar Shuoker;Camila Alvarez-Silva

  • Potential of Aerobic Denitrification by Pseudomonas stutzeri TR2 To Reduce Nitrous Oxide Emissions from Wastewater Treatment Plants

    Morio Miyahara;Sang-Wan Kim;Shinya Fushinobu;Koki Takaki

  • Acyl-intermediate Structures of the Extended-spectrum Class A β-Lactamase, Toho-1, in Complex with Cefotaxime, Cephalothin, and Benzylpenicillin

    Tatsuro Shimamura;Akiko Ibuka;Shinya Fushinobu;Takayoshi Wakagi

  • Structural and thermodynamic analyses of solute-binding Protein from Bifidobacterium longum specific for core 1 disaccharide and lacto-N-biose I.

    Ryuichiro Suzuki;Jun Wada;Jun Wada;Takane Katayama;Shinya Fushinobu

  • Chitobiose Phosphorylase from Vibrio proteolyticus, a Member of Glycosyl Transferase Family 36, Has a Clan GH-L-like (α/α)6 Barrel Fold

    Masafumi Hidaka;Yuji Honda;Motomitsu Kitaoka;Satoru Nirasawa

  • Occurrence, properties, and applications of feruloyl esterases.

    Takuya Koseki;Shinya Fushinobu;Ardiansyah;Hitoshi Shirakawa

  • Crystal Structure of a Family 54 α-l-Arabinofuranosidase Reveals a Novel Carbohydrate-binding Module That Can Bind Arabinose

    Akimasa Miyanaga;Takuya Koseki;Hiroshi Matsuzawa;Takayoshi Wakagi

  • Unique Sugar Metabolic Pathways of Bifidobacteria

    Shinya Fushinobu

  • Crystal Structures of 4-α-Glucanotransferase from Thermococcus litoralis and Its Complex with an Inhibitor

    Hiromi Imamura;Shinya Fushinobu;Masaki Yamamoto;Takashi Kumasaka

  • Crystal structures of glycoside hydrolase family 3 β-glucosidase 1 from Aspergillus aculeatus

    Kentaro Suzuki;Jun-Ichi Sumitani;Young-Woo Nam;Toru Nishimaki

  • Role of a PA14 domain in determining substrate specificity of a glycoside hydrolase family 3 β-glucosidase from Kluyveromyces marxianus.

    Erina Yoshida;Masafumi Hidaka;Masafumi Hidaka;Shinya Fushinobu;Takashi Koyanagi

  • Crystal Structure of the Terminal Oxygenase Component of Cumene Dioxygenase from Pseudomonas fluorescens IP01

    Xuesong Dong;Shinya Fushinobu;Eriko Fukuda;Tohru Terada

  • Molecular Insight into Evolution of Symbiosis between Breast-Fed Infants and a Member of the Human Gut Microbiome Bifidobacterium longum

    Chihaya Yamada;Chihaya Yamada;Aina Gotoh;Mikiyasu Sakanaka;Mitchell Hattie

  • Mutational and structural analysis of cobalt-containing nitrile hydratase on substrate and metal binding

    Akimasa Miyanaga;Shinya Fushinobu;Kiyoshi Ito;Hirofumi Shoun

  • Structural basis for the ADP-specificity of a novel glucokinase from a hyperthermophilic archaeon

    Sohei Ito;Shinya Fushinobu;Issei Yoshioka;Shinji Koga

Frequent Co-Authors

Hirofumi Shoun
Hirofumi Shoun University of Tokyo
Motomitsu Kitaoka
Motomitsu Kitaoka Niigata University
Kenji Yamamoto
Kenji Yamamoto Ishikawa Prefectural University
Kiyohiko Igarashi
Kiyohiko Igarashi University of Tokyo
Makoto Nishiyama
Makoto Nishiyama University of Tokyo
Tomohisa Kuzuyama
Tomohisa Kuzuyama University of Tokyo
Masahiro Samejima
Masahiro Samejima University of Tokyo
Hiroshi Nishimasu
Hiroshi Nishimasu University of Tokyo
Hideaki Nojiri
Hideaki Nojiri University of Tokyo
Toshio Omori
Toshio Omori Shibaura Institute of Technology

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