World's Best Scientists 2026 revealed!
Philip Supply

Philip Supply

D-Index & Metrics

Microbiology

D-Index
65
Citations
19313
World Ranking
2478
National Ranking
145

Overview

Philip Supply is affiliated with the Institut Pasteur in France and has a research focus primarily within the fields of Medicine and Biochemistry, Genetics and Molecular Biology. Their work spans several subfields, including Infectious Diseases, Epidemiology, Molecular Biology, Surgery, and Molecular Medicine.

The main topics addressed in their research include:

  • Mycobacterium research and diagnosis
  • Tuberculosis Research and Epidemiology
  • Infectious Diseases and Tuberculosis
  • Antibiotic Resistance in Bacteria
  • Vaccines and immunoinformatics approaches
  • Genomics and Phylogenetic Studies
  • Leprosy Research and Treatment

Philip Supply has contributed to a number of scientific publications with notable recent papers such as:

  • A sister lineage of the Mycobacterium tuberculosis complex discovered in the African Great Lakes region, 2020, Nature Communications
  • A data compendium associating the genomes of 12,289 Mycobacterium tuberculosis isolates with quantitative resistance phenotypes to 13 antibiotics, 2022, PLoS Biology
  • Deep amplicon sequencing for culture-free prediction of susceptibility or resistance to 13 anti-tuberculous drugs, 2020, European Respiratory Journal
  • Genome-wide association studies of global Mycobacterium tuberculosis resistance to 13 antimicrobials in 10,228 genomes identify new resistance mechanisms, 2022, PLoS Biology
  • Rapid genomic first- and second-line drug resistance prediction from clinical Mycobacterium tuberculosis specimens using Deeplex-MycTB, 2020, European Respiratory Journal

Frequent publication venues for Philip Supply include:

  • Nature Communications
  • PLoS Biology
  • European Respiratory Journal
  • The Lancet Microbe
  • Nature Microbiology

In scientific collaborations, Supply has coauthored works regularly with several researchers, including:

  • Bouke C. de Jong
  • Stefan Niemann
  • Cyril Gaudin
  • Leen Rigouts
  • Thomas A. Kohl

This profile situates Philip Supply as an active contributor to the understanding of Mycobacterium tuberculosis and related infectious diseases, with a focus on genetic, epidemiological, and molecular aspects of bacterial resistance and diagnosis relevant to global health challenges.

Best Publications

  • Proposal for Standardization of Optimized Mycobacterial Interspersed Repetitive Unit-Variable-Number Tandem Repeat Typing of Mycobacterium tuberculosis

    Philip Supply;Philip Supply;Caroline Allix;Sarah Lesjean;Sarah Lesjean;Mara Cardoso-Oelemann;Mara Cardoso-Oelemann

  • Automated High-Throughput Genotyping for Study of Global Epidemiology of Mycobacterium tuberculosis Based on Mycobacterial Interspersed Repetitive Units

    Philip Supply;Sarah Lesjean;Evgueni Savine;Kristin Kremer

  • Ancient origin and gene mosaicism of the progenitor of Mycobacterium tuberculosis.

    M. Cristina Gutierrez;Sylvain Brisse;Roland Brosch;Michel Fabre

  • Variable human minisatellite-like regions in the Mycobacterium tuberculosis genome.

    Philip Supply;Edith Mazars;Sarah Lesjean;Véronique Vincent

  • Whole-genome sequencing for prediction of Mycobacterium tuberculosis drug susceptibility and resistance: a retrospective cohort study.

    Timothy M Walker;Thomas A Kohl;Shaheed V Omar;Jessica Hedge

  • High-resolution minisatellite-based typing as a portable approach to global analysis of Mycobacterium tuberculosis molecular epidemiology

    Edith Mazars;Sarah Lesjean;Anne-Laure Banuls;Michèle Gilbert

  • Origin, Spread and Demography of the Mycobacterium tuberculosis Complex

    Thierry Wirth;Falk Hildebrand;Caroline Allix-Béguec;Florian Wölbeling

  • Evolutionary history and global spread of the Mycobacterium tuberculosis Beijing lineage

    Matthias Merker;Camille Blin;Stefano Mona;Nicolas Duforet-Frebourg

  • Whole Genome Sequencing versus Traditional Genotyping for Investigation of a Mycobacterium tuberculosis Outbreak: A Longitudinal Molecular Epidemiological Study

    Andreas Roetzer;Roland Diel;Thomas A. Kohl;Christian Rückert

  • Evaluation and Strategy for Use of MIRU-VNTRplus, a Multifunctional Database for Online Analysis of Genotyping Data and Phylogenetic Identification of Mycobacterium tuberculosis Complex Isolates

    Caroline Allix-Béguec;Dag Harmsen;Thomas Weniger;Philip Supply;Philip Supply

  • Mycobacterium tuberculosis lineage 4 comprises globally distributed and geographically restricted sublineages.

    David Stucki;David Stucki;Daniela Brites;Daniela Brites;Leïla Jeljeli;Mireia Coscolla;Mireia Coscolla

  • Prediction of Susceptibility to First-Line Tuberculosis Drugs by DNA Sequencing.

    Caroline Allix-Béguec;Irena Arandjelovic

  • MIRU-VNTRplus: a web tool for polyphasic genotyping of Mycobacterium tuberculosis complex bacteria

    Thomas Weniger;Justina Krawczyk;Philip Supply;Stefan Niemann

  • Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues.

    Conor J. Meehan;Galo A. Goig;Thomas A. Kohl;Lennert Verboven

  • Rapid, comprehensive, and affordable mycobacterial diagnosis with whole-genome sequencing: a prospective study

    Louise J Pankhurst;Carlos del Ojo Elias;Antonina A Votintseva;Timothy M Walker

  • Identification of novel intergenic repetitive units in a mycobacterial two‐component system operon

    Philip Supply;Juana Magdalena;Sabine Himpens;Camille Locht

  • Genotyping of the Mycobacterium tuberculosis complex using MIRUs: association with VNTR and spoligotyping for molecular epidemiology and evolutionary genetics.

    Christophe Sola;Ingrid Filliol;Eric Legrand;Sarah Lesjean

  • Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis

    Philip Supply;Michael Marceau;Sophie Mangenot;David Roche;David Roche

  • Assessment of an Optimized Mycobacterial Interspersed Repetitive- Unit-Variable-Number Tandem-Repeat Typing System Combined with Spoligotyping for Population-Based Molecular Epidemiology Studies of Tuberculosis

    Mara Cardoso Oelemann;Mara Cardoso Oelemann;Roland Diel;Vincent Vatin;Vincent Vatin;Walter Haas

  • Linkage disequilibrium between minisatellite loci supports clonal evolution of Mycobacterium tuberculosis in a high tuberculosis incidence area

    Philip Supply;Robin M. Warren;Anne-Laure Bañuls;Sarah Lesjean

Frequent Co-Authors

Camille Locht
Camille Locht Institut Pasteur
Stefan Niemann
Stefan Niemann Research Center Borstel - Leibniz-Center for Medicine and Biosciences
Sebastien Gagneux
Sebastien Gagneux University of Basel
Dick van Soolingen
Dick van Soolingen National Institute for Public Health and the Environment
Roland Brosch
Roland Brosch Institut Pasteur
Kristin Kremer
Kristin Kremer KNCV Tuberculosis Foundation
Francis Drobniewski
Francis Drobniewski Imperial College London
Bruno Pot
Bruno Pot Vrije Universiteit Brussel
Effie Tsakalidou
Effie Tsakalidou Agricultural University of Athens
Sabine Rüsch-Gerdes
Sabine Rüsch-Gerdes Kiel University

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